BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927010

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76185.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   488    1e-137


> AT1G76185.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G20460.1); 
Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28590325-28591518 
FORWARD LENGTH=854
Length=854

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 329/361 (91%), Gaps = 2/361 (1%)
 Strand=Plus/Plus

Query  2    GGGACTTGGTGGAGAAG--GCGATGATAACAAGATCGAATTTAGCAGAACAGCTGAGGGA  59
            |||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||
Sbjct  151  GGGACTTGGTGGAGAAGAAGCGATGATAACAAGATCGAATCTAGCAGAACAGCTCAGGGA  210

Query  60   GTATCAGATTAGATCAAAACATGATTGGGCTTCCGTTTCTTTCTTTTCTTCAACCTCCAA  119
             ||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct  211  ATATCAGATTAGATCAAAGCATGATTGGGCCTCCGTTTCTTTCTTCTCTTCCACCTCCAA  270

Query  120  TTTCTCTTCCTCCAGGGTCGATGTCGTAGTATTTGTCATATGGGAACTAGTGATCTTAGC  179
            |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||
Sbjct  271  TTTCTCTTCCTCCAGGGTTGATGTTGTAGTCTTTGTCATATGGGAACTAGTGATGTTAGC  330

Query  180  ATTCCTGGTGTTTTCAGCAGTATCCTTTTACTTTAGGCGGTTGCAGCTCGCATTCATCCT  239
            | || ||||||||||||| |||||||| ||||| ||||||||||| || || || |||||
Sbjct  331  ACTCGTGGTGTTTTCAGCTGTATCCTTGTACTTCAGGCGGTTGCAACTTGCTTTTATCCT  390

Query  240  GGTTTGTGTTGCCTTACTATTGTTCGTCTGTATGAAAATCACAAAGCAAGTGAGACAAGC  299
            | |||||||  ||||||||||  || ||||||||||||||||||||||||||||||| ||
Sbjct  391  GCTTTGTGTCACCTTACTATTACTCCTCTGTATGAAAATCACAAAGCAAGTGAGACATGC  450

Query  300  AAGGAAGAAGAAGCGAAGAATGCTTCTTCCTCTCTCTATGTAAAGACCGAAACCACTGAG  359
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  451  TAGGAAGAAGAAGCGAAGGATGCTTCTTCCTCTCTCTATGTAAAGACCGAAACCATTGAG  510

Query  360  C  360
            |
Sbjct  511  C  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5