BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927012
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76210.1 | Symbols: | Arabidopsis protein of unknown functi... 1162 0.0
> AT1G76210.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr1:28594950-28595981 REVERSE LENGTH=1032
Length=1032
Score = 1162 bits (629), Expect = 0.0
Identities = 691/720 (96%), Gaps = 7/720 (1%)
Strand=Plus/Plus
Query 1 TCTCGAATAGATTTAG----ATCTATGGCTCAGATCAACTTTGAGGGTTTGAGAGAGCTA 56
||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||
Sbjct 76 TCTCGAATAGATTAAGATCTATCTATGGCTCAGATTAACTTTGAGGGTTTGAGAGAGCTA 135
Query 57 CATGACTGCGTAAACTATCTCCTCGATCACTGTCCGAAAACAAGAGAATCTCTGTCTCAG 116
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 136 CACGACTGCGTAAACTATCTCCTCCATCACTGTCCGAAAACAAGAGAATCTCTGTCTCAA 195
Query 117 CAAGGACAAGAGAAATGTACGGAACAAGTTTCAGAAGCTTCATTGAGGATGTTAGACATC 176
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 CAAGGACAAGAGAAATGGACGGAACAAGTTTCAGAAGCTTCATTGAGGATGTTAGACATC 255
Query 177 TGTAACGTATCCAAAGATGTGATGACGCTCGTGAAACACAGCTTGCAAGATCTACAACTG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TGTAACGTATCCAAAGATGTGATGACGCTCGTGAAACACAGCTTGCAAGATCTACAACTG 315
Query 237 ACTCTACGTGGCAACGAATCATCTGATGTCAACGAGAAGATAGCTGCGTATAATCGGTAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 ACTCTACGTGGCAACGAATCATCTGATGTCAACGAGAAGATAGCTGCGTATAATCGGTAT 375
Query 297 AAGAACAAGCTCAAGAAGGAGACACTGAAATGCTTAAACTGTTTGAAGAACATGAAAGGA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AAGAACAAGCTCAAGAAGGAGACACTGAAATGCTTAAACTGTTTGAAGAACATGAAAGGA 435
Query 357 AGCGAAGGAAGAGTGGCCATGCCAATAGAACAGAACCTTCTGTTTGT-AGCAGAGGTTTT 415
| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 436 AACGAAGGAAGAGTGGCCATGCCAATAGAACAGAACCTTCTGTTTGTCA-CAGAAGTTTT 494
Query 416 GAAGGAAGTGAGAAGAGTAGTTGTGACGATGGTTGAGTCTTTGTTCTCACTTGGTTGCAT 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 495 GAAGGAAGTGAGAAGAGTCGTTGTGACGATGGTTGAGTCTTTGTTCTCACTTGGTTGTAT 554
Query 476 TCCTTGGCTAGAGAAGAGATCGAGCAAAGGGTCTTTGTCTTCGATCTTTACCATTCGGTC 535
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 555 TCCTTGGCTAGAGAAGAGATCGAGCAAAGGGTCTTTGTCTTCGATCTTTTCCATTCGGTC 614
Query 536 TTCTTATTTGTTAGATGATGTATGGGACGAGACCGCAGTGCAAAGCGCGACTACAAGGTT 595
||| |||||||||||||||| |||||||||||| || ||||||||||||||||| |||||
Sbjct 615 TTCCTATTTGTTAGATGATGAATGGGACGAGACTGCGGTGCAAAGCGCGACTACGAGGTT 674
Query 596 GGAGGCAGCGGAGATTGCTGTAGAGGAGCTTGAGATAGAGTTGGAGTCTATTTTCCGGCG 655
|||||| ||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 675 GGAGGCGGCGGAGATTACTGTAGTGGAGCTTGAAATAGAGTTGGAATCTATTTTCCGGCG 734
Query 656 ATTGATTCAGACGAGAGTTTCACTTCTTAATATTCTCACCAACTAGATAATA-ATAATAT 714
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 735 ATTGATTCAGACGAGAGTTTCACTTCTTAATATTCTCACCAACTAGATAATATATGATAT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5