BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927017
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76250.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1932 0.0
> AT1G76250.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: endomembrane system; EXPRESSED
IN: 6 plant structures; EXPRESSED DURING: 4 anthesis,
petal differentiation and expansion stage; Has 74 Blast hits
to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes
- 4 (source: NCBI BLink). | chr1:28606450-28609128 REVERSE
LENGTH=1602
Length=1602
Score = 1932 bits (1046), Expect = 0.0
Identities = 1252/1352 (93%), Gaps = 11/1352 (1%)
Strand=Plus/Plus
Query 1 CGATCACTTACGCCACCGCCATGTACGTTTCCAGGAAAATCTCCGAcgtcgatcgtcgtc 60
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 167 CGATCACTTACGCCGCCGTTATGTACGTTTCCAGGAGAATCTCCGACGTCGATCGTCGTC 226
Query 61 ttcttctccttctcataatcccgtctctctccctcctcgtcttaatctctttctcatctc 120
|||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 227 TTCTCCTCCTTCTCATAATCCCATCTCTCACCCTCCTCGTCTTAATCTCTTTCTCATCTC 286
Query 121 tctcccttGATCCTTTTCCAACCCTAGCACCTCTTCGTAACCTAATCTACACTCATCCCC 180
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 287 TCTCACTTGATCCTTTTCCAACTCTAGCCCCTCTTCGTAACCTAATCTACACTCATACCC 346
Query 181 TAACCGTCACAACCGAAACCTCCGATTTCACCGTC-GATTCGAACCCTAGCGACGTTATT 239
||||||| | ||||| | ||| | | ||| ||||||||||||| |||||||| |
Sbjct 347 TAACCGT--C-ACCGATTTCACCG-TCGAATTGTCAGATTCGAACCCTAACGACGTTA-T 401
Query 240 CC-GGCGGAGGAGATGGAAAATCAACGGCGGAGGAAGAGGGAGGAGTTGGAAAAGTCCAA 298
|| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 402 CCAAGCGGAGGAGATGGAAAATCGACGGCGGAGGAAGAGGGAGGAGTTGGTTAAGTCGAA 461
Query 299 GATTGCGGTGTGTTTGGTAGGAGGAGCGAGGCGGTTCGAGTTAACCGGACCGTCGATTAT 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 462 GATTGCGGTGTGTTTGGTAGGAGGAGCGAGGCGGTTTGAGTTAACCGGACCGTCGATTAT 521
Query 359 GGAGAAGATCTTGAGGGTTTATCCAAATGCTGATTTGTTTCTTAATAGTCCTCTTGACCA 418
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 522 GGAGAAGATCTTGAGGGTTTATCCTAATGCTGATTTGTTTCTTAATAGTCCTCTCGACAA 581
Query 419 AAATTCGTTT-AAACTTCGGTTGCTTAAGGACGCACCAAGACTCGCGTGGGTTCGTATCT 477
|||||| ||| ||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 582 AAATTC-TTTCAAACTTCGGTTACTTAAGGACGCACCAAGACTTGCTTGGGTTCGTATCT 640
Query 478 TCGAGCCTAAGCCGATCAATGAGACTGAGCCGATGGTTCGAGTCCTCACACCTATGAATT 537
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTGAGCCTAAGCCAATCAATGAGACTGAGCCGATGGTTCGAGTCCTCACACCTATGAATT 700
Query 538 CGCCCAATGGCATTAAGGGCTTATTACAGTACTTCAACCTTGTAGAAGGTTGCATCACTA 597
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 701 CGCCCAATGGCATTAAGGGCTTATTACAGTACTTCAACCTTGTGGAAGGTTGCATCACGA 760
Query 598 TGATAAAGGCATACCAAAACGAGAATAACTTCACATACGAGTGGATAGTCCGGACCCGTG 657
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 761 TGATAAAGGCATACCAAAACGAGAATAACTTCACATACGACTGGATAGTCCGGACCCGAG 820
Query 658 TTGACGGTTACTGGGCTGACCCGCTCGACCCGGAATACTTTATACCTGGTCAGTACCTAG 717
|||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 821 TTGATGGTTACTGGGCTGACCCGCTCGACCCGGAATACTTCATACCGGGTCAATACCTAG 880
Query 718 TCCCACCTGGATCCTCTTACGGTGGTCTCAACGACCGTTTTGGCGTCGGCGATCTCAACA 777
| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 881 TTCCACCTGGATCCTCTTATGGTGGTCTCAACGACCGTTTCGGCGTCGGAGATCTCAACA 940
Query 778 CTTCGACGGTAGCTCTCTCGCGCCTCTCCCTCATTCCCGACCTCGACTCAGCTGGGTTAA 837
| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 941 CCTCGACGGTAGCTCTCTCTCGCCTCTCCCTCATTCCCGACCTCGATTCAGCCGGGTTAA 1000
Query 838 CTCATCTCAACTCCGAGTCTGCCTTCAAGGCTCAGCTCACAACTCACCGTGTCCCTTACG 897
||||||| ||||||||||| || |||||||||||||||||||| || ||||| |||||||
Sbjct 1001 CTCATCTGAACTCCGAGTCCGCTTTCAAGGCTCAGCTCACAACCCAACGTGTTCCTTACG 1060
Query 898 TCACCAAACCTCTCCCTTTCTGTATCATGACCGATCGGACCTACGATTTTCCTCCGGCTA 957
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct 1061 TCACCAAACCTCTCCCTTTCTGCATCATGACTGATCGGACCTACGATTTCCCTCCATATA 1120
Query 958 GATACGGAGTTCCAGTGGCGGCTCTTTCGAGCCATGGACCGTTGAATGGTGCCAAGTGCC 1017
|||||||||||||||||||||| || ||||||| ||||||||| || |||||||||||||
Sbjct 1121 GATACGGAGTTCCAGTGGCGGCACTATCGAGCCGTGGACCGTTAAACGGTGCCAAGTGCC 1180
Query 1018 GTCCTTGCACGGTCGCGTGCAACGGCTCGTGCGTGGCGGAAGTGATGGGAAAGCTGAATA 1077
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1181 GTCCTTGCACGGTCGCATGCAACGGCTCTTGCGTGGCAGAAGTGATGGGAAAGCTGAATA 1240
Query 1078 AAGAGTGGAGCTGGACGGAGTGGGAGAACGGGGCGGTGGAGCTTTGCGACGGACATGGGG 1137
|||||||||||||||| |||||||| |||| | |||||||||| ||||||| |||||| |
Sbjct 1241 AAGAGTGGAGCTGGACAGAGTGGGAAAACGAGACGGTGGAGCTGTGCGACGCACATGGAG 1300
Query 1138 AATGGGAGGAAGGTTGGGAGAAGATTTTTGACAAAACCGCCGGTGAAAACCTCGCACTTG 1197
|||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 1301 AATGGGAGAAAGGTTGGGAGAAGATTTTTGACGAAACCGCTGGAGAAAAACTCGCACTTG 1360
Query 1198 CGAGGAAACGAATCGGTGATTTGGATTCAAGGAGATGTGTGGAAGAGTTTGAAAATATGA 1257
||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1361 CGAGGAAACGAGTCGGTGGTTTGGATTCGAGGAGATGTGTGGAAGAGTTTGAAAATATGA 1420
Query 1258 GAGGAATGACCGTTAAATGGGAAGCTCCCGCCTCTGAACAGATTTGTA-TGTTGGGTTTA 1316
|||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||| |||
Sbjct 1421 GAGGAATGGCCGTTAAATGGGAAGCTCCCGCCTCCGAACAGATTTGTACT-TTGGGCTTA 1479
Query 1317 CGGCCCAATTAGAACATATCGGGCTTTAGGTC 1348
||||||||||||||||||||||||||||||||
Sbjct 1480 CGGCCCAATTAGAACATATCGGGCTTTAGGTC 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5