BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927036

Length=1273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35500.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   134    3e-30
  AT1G35614.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   119    8e-26


> AT1G35500.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G35614.1); 
Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:13066087-13066596 
FORWARD LENGTH=417
Length=417

 Score =  134 bits (72),  Expect = 3e-30
 Identities = 154/192 (80%), Gaps = 12/192 (6%)
 Strand=Plus/Minus

Query  89   CTCACACCGGGCTTCGTTGATGGCAAGAG-TTTCCTCTCTTGGACCGTCAGATGCGCCAT  147
            |||||| ||| | || || ||||||||||   ||| ||||||||| ||||||||||||||
Sbjct  246  CTCACATCGGACCTCATTAATGGCAAGAGAACTCC-CTCTTGGACTGTCAGATGCGCCAT  188

Query  148  GTCCGATGGAGACGTCGACGGCGCACGGCGAATCTATCTTCTGGGTGGAGATCA-CACGG  206
            ||||||||||||||||||||||||||| || ||||||||||||||||| || |  |  ||
Sbjct  187  GTCCGATGGAGACGTCGACGGCGCACGACGGATCTATCTTCTGGGTGGCGAGCTTCT-GG  129

Query  207  CTCTCCGCTTGTGCTTCATCAGA-AAAGATGGTGAGACCTCTCACCCACT-CTCTT-GGA  263
             |||| | | |  ||||||| |  ||| |||||||| | | || |||| | || || |||
Sbjct  128  TTCTCTGATAGCACTTCATCGGTTAAA-ATGGTGAGTCTTATCTCCCA-TGCT-TTCGGA  72

Query  264  TCTTCC-AGATC  274
            | |||| |||||
Sbjct  71   T-TTCCGAGATC  61


> AT1G35614.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G35500.1); 
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:13148592-13149559 
FORWARD LENGTH=342
Length=342

 Score =  119 bits (64),  Expect = 8e-26
 Identities = 85/95 (89%), Gaps = 2/95 (2%)
 Strand=Plus/Minus

Query  102  TCGTTGATGGCAAGAGTTTC-CTCTCTTGGACCGTCAGATGCGCCATGTCCGATGGAGAC  160
            |||||||||||| |||   | | ||||||||||||||||||||||||||||| |||||||
Sbjct  263  TCGTTGATGGCAGGAG-AACTCACTCTTGGACCGTCAGATGCGCCATGTCCGGTGGAGAC  205

Query  161  GTCGACGGCGCACGGCGAATCTATCTTCTGGGTGG  195
            || |||||||||||||| ||||||||| |||||||
Sbjct  204  GTAGACGGCGCACGGCGGATCTATCTTTTGGGTGG  170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 62600079615


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5