BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927043
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76470.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1616 0.0
> AT1G76470.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:28689770-28691449 REVERSE LENGTH=1207
Length=1207
Score = 1616 bits (875), Expect = 0.0
Identities = 965/1008 (96%), Gaps = 7/1008 (1%)
Strand=Plus/Plus
Query 1 TTGCTAAAGAGA-ACGACGCCAATGGCTGAAAAGCAAAAGGTCTGTGTTACTGGTGCTGG 59
|||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 24 TTGCTAAAGAGAGA-GACGCCAATGGCTGTAAAGCAAAAGGTCTGTGTTACTGGTGCAGG 82
Query 60 AGGGTTTATTGCTTCATGGCTCGTCAAGTTTCTTCTCTCTCGTGGCTACACTGTCCATGG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 AGGGTTTATTGCTTCATGGCTCGTCAAGTTTCTTCTCTCTCGTGGCTACACTGTCCATGG 142
Query 120 AACTGTTCGAAATCCTTGTGATGAAAAGAATGACCATTTGAGGAAATTGGATAATGCTGC 179
||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 143 AACCGTTCGAGATCCTTGTGATGAAAAGAATGACCATTTGAGGAAACTGGATAATGCTTC 202
Query 180 ACAGAATCTGAAACTTTTCAAGGCAGATTTGTTTGATTATGAAGGTCTTTTCTCAGCCAT 239
| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 203 AAAAAATCTGAAACTTTTCAAGGCAGATTTGTTTGATGATGAAGGTCTTTTCTCAGCCAT 262
Query 240 TGATGGTTGCTCTGGCGTTTTCCATATCGCTTCTCCTGTGCCTTTTGAAGGAGTTCCTCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TGATGGTTGCTCTGGCGTTTTCCATATCGCTTCTCCTGTGCCTTTTGAAGGAGTTCCTCT 322
Query 300 CACAGAGGAAGAACTGATTAAACCAGCTCTCACTGGCACCAAGAATGTTCTAGAAGCATG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CACAGAGGAAGAACTGATTAAACCAGCTCTCACTGGCACCAAGAATGTTCTAGAAGCATG 382
Query 360 CACAGAAACTAAAGTGCAGAAAGTTGTGGTTGTATCATCAATTGCTGCAGTTGTCTACAA 419
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 383 CACAGAAACCAAAGTGCAGAAAGTTGTGGTTGTATCATCAATCGCTGCAGTTGTTTACAA 442
Query 420 TCCAAAATGGCCTCAAGGTGTTGCTAAGGACGAGGGTTGTTGGTCAGACACTCAATACCT 479
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 443 TCCAAAATGGCCTCAAGATGTTGCTAAGGACGAGGATTGTTGGTCAGACACTCAATACCT 502
Query 480 TCACTCACTTGAGGGTTATTGGCCTTATTACTATCTGGCCAAAACATTAACGGAACGTGA 539
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 503 TCACTCACTTGAGGGTTATTGGCGTTATTACTATCTTGCCAAAACATTAACGGAACGTGA 562
Query 540 AGCTTTAGAGTGGAGGAAGAGAAACTTTGCTGAGGTTGTTACGCTCTGTCCGTCTGTCAC 599
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 563 AGCTTTAGAGTGGAGTAAGAGAAACTTTGCTGATGTTGTTACGCTCTGTCCGTCTGTCAT 622
Query 600 GATAGGCCCTAGGCTACAATCTACGCTTAACTCTAGTAGTTTGGGACTTCTCAAATTCAT 659
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 623 TATAGGCCCTAGGCTTCAATCCACGCTTAACTCTAGTAGTTTGGGACTTCTCAAGTTCAT 682
Query 660 AAAAGGCGGTATAAAGTCCTTGTTGAGCGATCAACTGTATCTTGTGGATGTGCGTGATGT 719
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 683 AAAAGGTGGTATAAAGTCCTTGTTGAGCGATGAACTGTATCTTGTGGATGTGCGTGATGT 742
Query 720 TGCGGATGCACTTTTGTTGGTGTATGAAAACCGAGAAGCCAA-AGGAAGATACATATGCA 778
||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||| |
Sbjct 743 TGCGGATGCGCTTTTGTTGGTGTATGAAAATCGAGAAGC-AACAGGAAGATACATATGTA 801
Query 779 ATTCTCATTCACTTCACA-TCGATACTCTTATGGAGAAGCTCAAGAATATGTATCCTAAA 837
|||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 802 ATTCTCATTCACTTTACACT-GATTCTCTTATGGAGAAGCTCAAGAATATGTATCCTAAA 860
Query 838 CGCAACTTCCCTGAAAGTTTCACTGAGGTAAAAGAGAAGGAAGTGAGGCCTCTAAGTGCA 897
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 861 CGCAACTTCCCTGAAAGTTTCACGGAGGTAAAAGAGAAGGAAGTGAGGCCTCTAAGTGCA 920
Query 898 GAGAAGTTGAAGAATTTAGGGTGGAAGTTTAGGCCACTAGAAGAAACCATTGATGATTCT 957
||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 921 GAGAAGTTGAAAAACTTGGGGTGGAAGTTTAGGCCATTAGAAGAAACCATTGATGATTCT 980
Query 958 GTTGTGAGCTTTGAAGTAGCTGGTGATCTTCCAAAGGCATA-GCTTAC 1004
|||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 981 GTTGTGAGCTTTGAAGCAGCTGGTGATCTTCCAAAGGCATAAGCTTAC 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5