BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927049
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76520.1 | Symbols: | Auxin efflux carrier family protein |... 1832 0.0
AT1G76530.1 | Symbols: | Auxin efflux carrier family protein |... 675 0.0
AT1G20925.1 | Symbols: | Auxin efflux carrier family protein |... 414 8e-115
> AT1G76520.1 | Symbols: | Auxin efflux carrier family protein
| chr1:28715078-28717416 FORWARD LENGTH=1519
Length=1519
Score = 1832 bits (992), Expect = 0.0
Identities = 1128/1194 (94%), Gaps = 7/1194 (1%)
Strand=Plus/Plus
Query 6 GCGTTAATAATAAAAAGATGGTGAAGCTTTTGGAGCTGTTCATAACTTCATCGAAACCAG 65
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 203 GCGTTGATAGTAAAAAGATGGTGAAGCTTTTGGAGCTGTTCATAACTTCATCAAAACCAG 262
Query 66 TTGTGGAGATTCTGTTGATAACATCTGTCGGATTTTATATGGCTCTTGACGGTGTCAATC 125
| || |||||||||||||||||||| |||||||||||||||||||| || || |||||||
Sbjct 263 TCGTTGAGATTCTGTTGATAACATCAGTCGGATTTTATATGGCTCTCGATGGAGTCAATC 322
Query 126 TTCTTGGTCATGATGCTCGCAAATATTTGAACAACATTGTCTTCTATGTGTTTGGTCCTT 185
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 323 TTCTTGGTCATGATGCTCGTAAATATCTGAACAACATTGTCTTCTATGTGTTTAGTCCTT 382
Query 186 CGCTTATTGGAAGTCGTTTAGCTGATAGTGTTACATATGAAAGCTTGGTCAAAATGTGGT 245
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 383 CGCTTATTGGAAGCCGTTTAGCTGATAGTGTTACATACGAAAGCTTGGTCAAAATGTGGT 442
Query 246 TTATGCCGGTTAATGTTCTG-TTGACATTCATCATTGGTTCGTTA-TTAGGCTGGATTGT 303
| |||||||| ||||||||| || ||||||||||||||||| ||| || |||||||||||
Sbjct 443 TCATGCCGGTGAATGTTCTGCTT-ACATTCATCATTGGTTCATTACTT-GGCTGGATTGT 500
Query 304 TATTGTCATCACTAAGCCTCCTTCACATCTTCGTGGTCTCATTCTTGGTTGTTGTGCTGC 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 501 TATTGTCATCACTAAGCCTCCTTCACACCTTCGTGGTCTCATTCTTGGTTGTTGTGCTGC 560
Query 364 TGGGAATTTGGGGAATATGCCACTGATTATAATCCCAGCCGTTTGTAAAGAAAAAGGAGG 423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 561 TGGGAATTTGGGGAATATGCCACTGATTATAATCCCAGCTGTTTGTAAAGAAAAAGGAGG 620
Query 424 TCCCTTTGGAGATCCAGAGAGTTGCCAGAAATATGGAATGGGCTATGTTGCTCTCTCCAT 483
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 621 TCCCTTTGGAGATCCTGAGAGTTGCCAGAAATATGGAATGGGTTATGTTGCTCTCTCCAT 680
Query 484 GGCAATGGGATCGATTTACATATGGACTTACGTATACAATCTAATGCGTGTGCTATCGAA 543
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 681 GGCTATGGGATCTATTTACATATGGACTTATGTATACAATCTTATGCGTGTGCTATCGAA 740
Query 544 CTCTCCCATTGAAACCCCTCCCTCTGTTGAATCCAACTACGACAGCTACAAAGTTCCACT 603
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 741 CTCTCCCGTTGAAACCCCTCCCTCTGTTGAATCCAACTACGACAGCTACAAAGTTCCCCT 800
Query 604 TATTACTTCTAAGGAAGAAGAAGAAGACAACCAAAAGGCTGGGAGGTGGGAAAAAGTGAA 663
|||| |||| |||||||||| | || ||||||||||||||||||||||||||||||| ||
Sbjct 801 TATTTCTTCCAAGGAAGAAG-A-AA-ACAACCAAAAGGCTGGGAGGTGGGAAAAAGTCAA 857
Query 664 GCGGAGATTGGTATCACTGTCAGAGAAAGTCAACCTTAAGACAATATTTGCTCCATCAAC 723
|||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 858 GCGGAGATTGGTTTCACTGTCACAAAAAGTCAACCTTAAGACAATTTTTGCTCCATCAAC 917
Query 724 TATTGCTGCGATGATCGCGCTTGTGATCGGGCTCATTACTCCTTTAAGGAAGCTAATAAT 783
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TATTGCTGCGATGATTGCACTTGTGATCGGGCTCATTACTCCTTTAAGGAAGCTAATAAT 977
Query 784 TGGCACAGAAGCTCCTCTCCGGGTTCTTCAAGATTCAGTAACTCTAGTGGGAGATGGGGC 843
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 978 CGGCACGGAAGCTCCTCTCCGGGTGCTTCAAGACTCAGTAACTCTAGTGGGAGATGGGGC 1037
Query 844 AGTTCCTGCTATGACCATGATTATAGGAGGAAACCTACTCAAAGGTTTGAGGAGTTCAGG 903
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AGTTCCTGCAATGACCATGATTATAGGAGGAAACCTACTCAAAGGTTTGAGGAGTTCAGG 1097
Query 904 AATGAAAATGTCCAGTATTATCGGTGTCTTGGTTGCACGCTACGCTTTGCTGCCTATGAG 963
|||||||||||||||||||||||| ||||||||||| || |||| ||| |||||||||||
Sbjct 1098 AATGAAAATGTCCAGTATTATCGGCGTCTTGGTTGCGCGTTACGTTTTACTGCCTATGAG 1157
Query 964 CGGTGTTTTAATCGTAAGAGGAGCATATAAGTTGGATTTAATTACCTCAGAACCATTGTA 1023
|||||||||||||||||||||||||||||||||||||||| |||| ||||| || || ||
Sbjct 1158 CGGTGTTTTAATCGTAAGAGGAGCATATAAGTTGGATTTAGTTACATCAGAGCCCTTATA 1217
Query 1024 CCAATTCGTTCTTCTTCTTCAGTATGCTGTCCCACCAGCAATGAATCTAGGTACAATTAC 1083
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1218 CCAATTCGTTCTTCTTCTTCAATATGCTGTCCCACCAGCCATGAATCTAGGTACAATTAC 1277
Query 1084 ACAATTATTCGGAACCGGGGAGAGTGAATGCTCAGTGATTATGCTCTGGACTTACTCTTT 1143
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TCAGTTATTTGGAACTGGGGAGAGTGAATGCTCAGTGATTATGCTCTGGACTTACTCTTT 1337
Query 1144 GGCTTCGATTTCACTCACTGTTTGGCCAACATTCTTCATGTGGCTTGTCGCTTA 1197
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1338 GGCTTCGATTGCACTCACTGTTTGGCCAACATTCTTCATGTGGCTTGTAGCTTA 1391
> AT1G76530.1 | Symbols: | Auxin efflux carrier family protein
| chr1:28718213-28720371 FORWARD LENGTH=1441
Length=1441
Score = 675 bits (365), Expect = 0.0
Identities = 631/754 (84%), Gaps = 40/754 (5%)
Strand=Plus/Plus
Query 490 GGGATCGATTTACAT-ATGGACTTACGTATACAATCTAATGCGTGTGCTATCGAACTCTC 548
|||| || ||||| | ||||||||| |||| ||||| |||||||||||||| |||||||
Sbjct 610 GGGAACGGTTTAC-TCATGGACTTATATATA-AATCTTATGCGTGTGCTATCAAACTCTC 667
Query 549 CCATTGAAAC-C-C-CTCCCTCTGTTGAATCCAAC--T-ACGACAGCTACAAAGTTCC-A 601
|| ||||||| | | | | |||| ||||||||||| | | ||||||| ||||| ||| |
Sbjct 668 CCGTTGAAACACACACACACTCTATTGAATCCAACTATGATGACAGCTGCAAAG-TCCAA 726
Query 602 CTTATTACTTCTAA-G--GAAG---AAGAAGAAGACAACCAAAAGGCTGGGAGGTGGGAA 655
|| ||| |||| || | |||| |||||||||||||||| ||| |||||||||||||
Sbjct 727 CTAATTTCTTCCAAGGAAGAAGAAAAAGAAGAAGACAACCATCAGGTTGGGAGGTGGGAA 786
Query 656 AAAGTGAAGCGGAGA-TTGGTATCACTGTCAGAGAAAGTCAACCTTAAGACAATATTTGC 714
|||| |||| ||| || || || |||||| |||||||||||||| | ||||||||||
Sbjct 787 GAAGTCAAGCAAAGAGTT-GTTTCTCTGTCAAAGAAAGTCAACCTTGGGTCAATATTTGC 845
Query 715 TCCATCAACTATTGCTGCGATGATCGCGCTTGTGATCGGGCTCATTACTCCTTTAAGGAA 774
|||| ||||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 846 TCCAGCAACTATTGCTGCAATTATCGCGCTTGTGATTGGGCTTATTACTCCTTTAAGGAA 905
Query 775 GCTAATAATTGGCACAGAAGCTCCTCTCCGGGTTCTTCAAGATTCAGTAACTCTAGTGGG 834
|||||||| ||||| | ||||||| |||| || ||||||| ||| |||| ||| ||||
Sbjct 906 CCTAATAATCGGCACCGTAGCTCCTTTCCGTGTGATTCAAGACTCATTAACCCTATTGGG 965
Query 835 AGATGGGG-CAGTTCCTGCTATGACCATGATTATAGGAGGAAACCTACTCAAAGG--T-- 889
|||||||| || |||||||||||||| ||||| | ||||||||| |||| ||||| |
Sbjct 966 AGATGGGGCCA-TTCCTGCTATGACCCTGATTCTTGGAGGAAACTTACTTAAAGGAATGA 1024
Query 890 -----T------TGAGGAGTTCAGGAATGAAAATGTCCAGTATTATCGGTGTCTTGGTTG 938
| |||||||||||| |||||||| ||| | |||||||| |||||||| |
Sbjct 1025 GGAGGTCGGAAGTGAGGAGTTCAGAAATGAAAAACTCCTGCATTATCGGCGTCTTGGTAG 1084
Query 939 CACGCTACGCTTTGCTGCCTATGAGCGGTGTTTTAATCGTAAGAGGAGCATATAAGTTGG 998
| || ||| |||||| ||| | |||||||||||| |||| ||||||||||| |||||||
Sbjct 1085 CTCGTTACATTTTGCTACCTGTAAGCGGTGTTTTACTCGTGAGAGGAGCATACAAGTTGG 1144
Query 999 ATTTAATTACCTCAGAACCATTGTACCAATTCGTTCTTCTTCTTCAGTATGCTGTCCCAC 1058
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 ATTTAGTAACCTCAGAACCCTTGTACCAATTCGTTCTTCTTCTTCAGTATGCTGTCCCAC 1204
Query 1059 CAGCAATGAATCTAGGTACAATTACACAATTATTCGGAACCGGGGAGAGTGAATGCTCAG 1118
|||| |||||||||||||||| || ||||||||||| | ||||||||||||||||| |
Sbjct 1205 CAGCCATGAATCTAGGTACAAAGACCCAATTATTCGGCGCTGGGGAGAGTGAATGCTCTG 1264
Query 1119 TGATTATGCTCTGGACTTACTCTTTGGCTTCGA-TTTCACTCACTGTTTGGCCAACATTC 1177
|||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 1265 TGATTATGCTTTGGACTTACTCTTTGGCTGC-AGTTTCACTCACTGTTTGGCCAACATTC 1323
Query 1178 TTCATGTGGCTTGTCG-CTTAAAcccccccACTC 1210
|||||||||||||| | | |||| |||| |||||
Sbjct 1324 TTCATGTGGCTTGT-GACATAAATCCCCACACTC 1356
Score = 619 bits (335), Expect = 2e-176
Identities = 419/460 (91%), Gaps = 4/460 (1%)
Strand=Plus/Plus
Query 27 TGAAGCTTTTGGAGCTGTTCATAACTTCATCGAAACCAGTTGTGGAGA-TTCTGTTGATA 85
|||||||||||||| |||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 98 TGAAGCTTTTGGAGTTGTTCATAGCTTCATCGAAACCAGTTGTGGAGACTT-TGTTGATA 156
Query 86 ACATCTGTCGGATTTTATATGGCTCTTGACGGTGTCAATCTTCTTGGTCATGATGCTCGC 145
||||| || ||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 157 ACATCAGTTGGATTTTATTTGGCTCTCGACACAGTCAATCTTCTTGGTCATGATGCTCGC 216
Query 146 AAATATTTGAACAACATTGTCTTCTATGTGTTTGGTCCTTCGCTTATTGGAAGTCGTTTA 205
||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 217 AAACATTTGAACAACATTGTCTTCTATGTGTTTAGTCCTTCGCTTATTGGAAGCCGCTTA 276
Query 206 GCTGATAGTGTTACATATGAAAGCTTGGTCAAAATGTGGTTTATGCCGGTTAATGTTCTG 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GCTGATAGTGTTACATATGAAAGCTTGGTCAAAATGTGGTTTATGCCGGTTAATGTTCTG 336
Query 266 TTGACATTCATCATTGGTTCGTTATTAGGCTGGATTGTTATTGTCATCACTAAGCCTCCT 325
| |||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 337 CTCACATTCATGATTGGTTCGTTACTCGGCTGGATTGTTATTGTCATAACTAAGCCTCCT 396
Query 326 TCACATCTTCGTGGTCTCATTC-TTGGTTGTTGTGCTGCTGGGAATTTGGGGAATATGCC 384
||||| |||||||||||||| | || ||||||||||| ||||||||||||||| ||||||
Sbjct 397 TCACAGCTTCGTGGTCTCAT-CATTAGTTGTTGTGCTTCTGGGAATTTGGGGACTATGCC 455
Query 385 ACTGATTATAATCCCAGCCGTTTGTAAAGAAAAAGGAGGTCCCTTTGGAGATCCAGAGAG 444
|| ||||||||||||||| |||| || || ||||||||||||||||||||| | |||||
Sbjct 456 TCTCATTATAATCCCAGCCATTTGCAAGGAGAAAGGAGGTCCCTTTGGAGATTCTGAGAG 515
Query 445 TTGCCAGAAATATGGAATGGGCTATGTTGCTCTCTCCATG 484
|||| ||||||| |||||||| |||||| | || ||||||
Sbjct 516 TTGCGAGAAATACGGAATGGGTTATGTTACACTGTCCATG 555
> AT1G20925.1 | Symbols: | Auxin efflux carrier family protein
| chr1:7289973-7292507 FORWARD LENGTH=1419
Length=1419
Score = 414 bits (224), Expect = 8e-115
Identities = 423/519 (82%), Gaps = 14/519 (3%)
Strand=Plus/Plus
Query 27 TGAAGCTTTTGGAGCTGTTCATAACTTCATCGAAACCAGTTGTGGAGATTCTGTTGATAA 86
||| ||||||||| ||||||||||| ||||||| |||||||| | |||||||||||||||
Sbjct 266 TGAGGCTTTTGGATCTGTTCATAACCTCATCGATACCAGTTGCGAAGATTCTGTTGATAA 325
Query 87 CATCTGTCGGATTTTA-TATGGCTCTTGA-CGGTGTCAATC-TTCTTGGTCATGATGCTC 143
|| | |||||||| | |||||||||| | || || | |||| ||| |||||
Sbjct 326 CAGGAATTGGATTTTACT-TGGCTCTTGATC-AAGTTAA-CATTCTCAATCACGATGCAA 382
Query 144 GCAAATATTTGAACAACATTGTCTTCTATGTGTTTGGTCCTTCGCTTATTGGAAGTC-GT 202
| ||| | | ||||| || || |||||||||||| ||||||| ||| ||| ||| | ||
Sbjct 383 GAAAACAACTCAACAATATAGTTTTCTATGTGTTTAGTCCTTCTCTTGTTGCAAG-CAGT 441
Query 203 TTAGCTGATAGTGTTACATATGAAAGCTTGGTCAAAATGTGGTTTATGCCGGTTAATGTT 262
||| |||| | | ||||||| |||||| |||| ||||||||||| ||||| ||||||||
Sbjct 442 TTATCTGAGACTATTACATACGAAAGCATGGTGAAAATGTGGTTCATGCCACTTAATGTT 501
Query 263 CTGTTGACATTCATCATTGGTTCGTTATTAGGCTGGATTGTTATTGTCATCACTAAGCCT 322
|| | |||||||||||||||||||| || || ||||||||||| |||||||| |||
Sbjct 502 TTGCTAACATTCATCATTGGTTCGTTTTTGGGTTGGATTGTTATCAAAATCACTAAACCT 561
Query 323 CCTTCACATCTTCGTGGTC-TCATTC-TTGGTTGTTGTGCTGCTGGGAATTTGGGGAATA 380
||||| ||||| ||||| | ||| || |||||||||||||||||||||||||||||||||
Sbjct 562 CCTTCGCATCTCCGTGG-CATCA-TCGTTGGTTGTTGTGCTGCTGGGAATTTGGGGAATA 619
Query 381 TGCCACTGATTATAATCCCAGCCGTTTGTAAAGAAAAAGGAGGTCCCTTTGGAGATCCAG 440
||||||| ||||| |||||||| | ||||| ||||| ||| |||| ||||||||||| |
Sbjct 620 TGCCACTCATTATCATCCCAGCTATATGTAATGAAAAGGGAAGTCCTTTTGGAGATCCTG 679
Query 441 AGAGTTGCCAGAAATATGGAATGGGCTATGTTGCTCTCTCCATGGCAATGGGATCGATTT 500
|| ||| |||||| |||| | || ||| |||| ||||| ||||| || ||| | ||||
Sbjct 680 AGTCTTGTGAGAAATTTGGACTTGGTTATATTGCACTCTCTATGGCGATTGGAGCCATTT 739
Query 501 ACATATGGACTTACGTATACAATCTAATGCGTG-TGCTA 538
||||||||||||| ||||||||||| ||||| | |||||
Sbjct 740 ACATATGGACTTATGTATACAATCTTATGCG-GATGCTA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5