BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927052
Length=452
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76560.1 | Symbols: CP12-3 | CP12 domain-containing protein ... 534 2e-151
> AT1G76560.1 | Symbols: CP12-3 | CP12 domain-containing protein
3 | chr1:28728253-28728853 FORWARD LENGTH=601
Length=601
Score = 534 bits (289), Expect = 2e-151
Identities = 402/455 (88%), Gaps = 14/455 (3%)
Strand=Plus/Plus
Query 4 AAACGAAATTCACAAAGATGATGATGTC-GGCGACAGCGACGGTGATG-CGTGGGAGAGT 61
|||||||||| | ||| ||||| || ||| | ||||||| || | | |||||||||
Sbjct 16 AAACGAAATT--CGTAGA-AATGATCTCGGGC-TCGGCGACGGCGA-GTCATGGGAGAGT 70
Query 62 GATGCTTCCGTCACACCGGGAGCGACGGCCAATCTCAACTGGATCGGAGATTTTACGTCT 121
| ||||||||||||| ||||||||||||| ||||||||||||| | ||||||||| |
Sbjct 71 GTTGCTTCCGTCACAAAGGGAGCGACGGCCCGTCTCAACTGGATCAAATATTTTACGTTT 130
Query 122 AAAAGAAACAGTATCGAAG-CGATTCAGGCTGATGATGGTGACTACGGCGACGGCAAAGT 180
| |||||||||| || || | |||||| |||||||||||||| | ||||||||||||||
Sbjct 131 CAGAGAAACAGTACCG-AGACAATTCAGCCTGATGATGGTGACGAAGGCGACGGCAAAGT 189
Query 181 ATAAGGGGACGAAGATGAGGGAGGAGAAGCTATCGGAGATGATAGAGGAGAAAGTGAAGG 240
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 190 ATATGGGGACGAAGATGAGGGAGGAGAAACTATCGGAGATGATAGAGGAGAAAGTGAAGG 249
Query 241 AAGCGACGGAGGTTTGCGAGGCGGAAGAGA-GATCGGAGGAGTGTAGAGTCGCGTGGGAC 299
||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 250 AAGCGACAGAGGTTTGCGAGGCGGAAGAGATG-TCGGAGGAGTGTAGAGTTGCGTGGGAC 308
Query 300 GAAGTTGAAGAGGTGAGTCAAGCCAGAGCAGATCTGAGGATCAAGCTGAAGCTACTGAAC 359
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 309 GAAGTTGAAGAAGTGAGTCAAGCCAGAGCAGATCTGAGGATCAAGCTGAAGTTACTGAAT 368
Query 360 CATGATCCATTAGAAAGTTTCTGCCAGGAGAATCCAGAGACCGACGAGTGTCGAATCTAC 419
|| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CAGGATCCGCTCGAGAGTTTCTGCCAGGAGAATCCAGAGACCGACGAGTGTCGAATCTAC 428
Query 420 GAAGACTAAT-TTTAGAATTTCC-TGTTTTTAATG 452
||||||||| ||| || ||| | |||||||||||
Sbjct 429 GAAGACTAAAATTT-GAGTTTTCGTGTTTTTAATG 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21514596572
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5