BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927060

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76640.1 | Symbols:  | Calcium-binding EF-hand family protei...   760    0.0  


> AT1G76640.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr1:28765324-28765803 REVERSE LENGTH=480
Length=480

 Score =  760 bits (411),  Expect = 0.0
 Identities = 457/480 (95%), Gaps = 0/480 (0%)
 Strand=Plus/Plus

Query  22   ATGAAGAATACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTGGAGGACAAGAAC  81
            |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  1    ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTAGAGGAGAAGAAC  60

Query  82   AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGATGGTAGAATCTCTGCA  141
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA  120

Query  142  GAGGAGCTTAAGAAGAGTTTCAAGACATTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG  201
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  121  GAGGAGCTTAAGAAGAGTTTTAAGACGTTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG  180

Query  202  GCTGCGGTTAAACTGTCTGATATAGACGGTGATGGCATGTTGGATTTTCATGAGTTTGCT  261
            |||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||
Sbjct  181  GCTGCGGTTAAACTCTCTGATATAGACGGTGATGGGATGTTGGATATTAATGAGTTTGCT  240

Query  262  CAGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAGAAGAAGAGGAAGATTATGGAA  321
            | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  241  CTGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAAAAGAAGAGGAAGATAATGGAA  300

Query  322  GCTTTTAGAATGTATATTGCTGATGGGGAAGATTGCATTACCCCGGGAAGCTTGAAGATG  381
            |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct  301  GCTTTTAGAATGTACATTGCTGATGGAGAAGATTGCATTACTCCGGGGAGCTTGAAGATG  360

Query  382  ATGCTAATGAAGCTAGGTGAGTCGAGAACCACTGACGATTGCAAAGTTATGATTCAAGCT  441
            |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  361  ATGCTAATGAAGCTTGGTGAGTCTAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT  420

Query  442  TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGACGAGTTTGCTCTCATGATGCGCTAA  501
            ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct  421  TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGATGAGTTCGCCCTCATGATGCGCTAA  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24916136912


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5