BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927069
Length=3846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76740.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1397 0.0
> AT1G76740.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G76840.1);
Has 3683 Blast hits to 2942 proteins in 407 species: Archae
- 9; Bacteria - 440; Metazoa - 1472; Fungi - 269; Plants -
192; Viruses - 8; Other Eukaryotes - 1293 (source: NCBI BLink).
| chr1:28805235-28810557 FORWARD LENGTH=4679
Length=4679
Score = 1397 bits (756), Expect = 0.0
Identities = 1207/1409 (86%), Gaps = 94/1409 (7%)
Strand=Plus/Plus
Query 2518 ATTTCAAGTTGACTGTGGCATTTTCACAACTCCCGAGAAACATTTACTTCTGGAAACAGA 2577
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3225 ATTGCAAGTTGACTGTGGCATTTTCACAACTCCCGAGAAACATTTACTACTTGAAACAGA 3284
Query 2578 TGAAGGGGTAAAAGAAGACAATATAACTGCTAAGTCTCATGTTGTGAATGATGTTCTCGC 2637
|||||||||||||| |||||||||||| || ||||| |||||| || ||||||||||||
Sbjct 3285 TGAAGGGGTAAAAGGAGACAATATAACCGCCAAGTCACATGTTTTGTCTGATGTTCTCGC 3344
Query 2638 TGCTGCTGTGCCCCAATCTCTTATGGGAGATTGTGAGCTAGATGAAGCTG-AAAAA--TA 2694
||||| ||||||||| |||||||||||||| | ||||| ||||||||||| ||||| |
Sbjct 3345 TGCTGATGTGCCCCATTCTCTTATGGGAGACTCTGAGCCAGATGAAGCTGAAAAAACCT- 3403
Query 2695 CAG-AGAAATCAAGGATGTGGAAATGTTGGGTGAATCTAACACTTCCACTCACCCAGAGA 2753
| | ||| ||||||||||||||| ||||||||||||||||| |||||||| | |||||||
Sbjct 3404 CCGTAGAGATCAAGGATGTGGAATTGTTGGGTGAATCTAACTCTTCCACTAATCCAGAGA 3463
Query 2754 GACAAATAATGTTTGGAAACTCCGTACTAGATGAAACAAAAGATTATTCAGCAGCCACTT 2813
| | | | ||||||||||||||| |||||||||| ||| ||||| |||||||||||| |
Sbjct 3464 GCCCCACACTGTTTGGAAACTCCGAACTAGATGAATCAAGAGATTCTTCAGCAGCCACGT 3523
Query 2814 GCGAAGTGGCTTTTGTT-CTCACTTCTGCAGAGAGACAACTTTTAGTTAACTCT--AAA- 2869
|||||| |||||||||| | ||||||| |||||| | |||||||| ||||| || |||
Sbjct 3524 GCGAAGAGGCTTTTGTTAC-CACTTCTCCAGAGAAAGAACTTTTAATTAACCCTGGAAAG 3582
Query 2870 CCA-TAC---A-GTGATGGAAAG-CAA-GAACAAAAGG-AGGT--GGATGACAG-T-GTG 2917
| | || | | | ||| | | || | ||| | || | || ||| | |
Sbjct 3583 CAAGAACAAAAGGAGGTGG-ACGAAAATGTGGTTCAGGAAAGTCACGTTG-CAGCTCCAG 3640
Query 2918 -GTTCAG-GAAAACACCATTGTTGACTCAAGCGGTAGTATCGCATCCAAAGTTTCTTACA 2975
||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3641 ATTTCAGAGGAAACACCATTGTTGACTCAAGCGGTGGTATCGCATCCAAAGTTTCTTACA 3700
Query 2976 ACCATGAGC-T--T-----------AA-TGC-TGGGCA-AG-AAACTG-C---AGG---T 3010
||||||||| | | || ||| || ||| || || || | ||| |
Sbjct 3701 ACCATGAGCTTAATGCGGGGCAAGAAACTGCATGTGCAGAGTTAA-TGTCAAAAGGTTCT 3759
Query 3011 ---GCAGAGGATGTTGTAGGTCTAGATGCTACACAAGGAACATCAAAGAAAAGCAGAGAG 3067
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |
Sbjct 3760 CAGGCAGAGGATGTTGTAGGTCTTGATGCTACACAAGGGACATCAAAGAAAAGAAGAGGG 3819
Query 3068 CATTCT-C-CA--C--A-T--G---------TTGA--C--AC--TGAGGAGGCAGAGACA 3103
|||||| | || | | | | |||| | || |||||||| ||| |||
Sbjct 3820 CATTCTCCACATGCTGACTCAGTAAATCTTTTTGATTCTAACATTGAGGAGGTAGATACA 3879
Query 3104 ATCATGGAAGCAGaaaaaaaTATTTCCTCTAGCTCCTTTGTTGCGTTACCAGCCGAAGGT 3163
|||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||| |||
Sbjct 3880 ATCATGGAAGCAGAAAGAAATATTTCCTTTAGCTCCTATGTTGCGGTACCAGCCGAGGGT 3939
Query 3164 AACAACTCCGAGACAATTGGTGAAATTTCCAGCTACCTTGAAGTCGCTGGAACCTGTTCT 3223
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 3940 ---AACTCCGAGACAATTGGCGAAATTTCCAGCTACCTTGAAGTTGCTGGAACCTGTTCC 3996
Query 3224 ATGGTGTCAGTA-GAATCTGG-TCCTTCCACAGACATTCAGAACCAAATAAATGATGCGT 3281
||||||| | | |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 3997 ATGGTGTTTG-ATGAATCTGGAT-CTTCCACAGACATTCAGAACCAAATAAATGATGCGC 4054
Query 3282 TGGAGGAATGGGCAATAACAGACAATAATGAAGTAGATGAGGTCGTAGAAGCAAAGGTAA 3341
|| |||||||||||||||||||||| ||||||| ||||||| || ||||||||| ||||
Sbjct 4055 TGAAGGAATGGGCAATAACAGACAAAAATGAAGCAGATGAGCTCATAGAAGCAATTGTAA 4114
Query 3342 C-AGAGAACATTCAAAAAGGCTTCGAAGGAAATCTCCTTTTGAACTCCTCAGGTGGTGGC 3400
| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 4115 CTA-AGAACATTCAAAAAGACTTCGAAGGAAATCTCCTTCTGAACTCCTCAGGTGGTGGC 4173
Query 3401 TCTAATGTCTCTGGAGAGACATGCATCTTAGGTGAAACGGAGGATGAAGATGAAGCAGCT 3460
||||||||||||||||| ||| ||||||||| || ||||| |||||||||||||||||||
Sbjct 4174 TCTAATGTCTCTGGAGAAACAAGCATCTTAGCTGGAACGGCGGATGAAGATGAAGCAGCT 4233
Query 3461 GTTCCAATTGCTATTGCCGTT-GAGAAAGCTATCTCCCTGACTCCTGATGAATTGACTGT 3519
| |||||||||||||||| || | |||||||| || |||||||||||||||||||||||
Sbjct 4234 GGTCCAATTGCTATTGCC-TTCGTTAAAGCTATGTCTCTGACTCCTGATGAATTGACTGT 4292
Query 3520 TCAGAATCACATTAATGAAAAAGCTGCAGATGAGGAAATGATCACGAGAGAATCTACTCC 3579
| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4293 TAAGAATCACATGAATGAAAAAGCTGCAGATGAGGAAATGATCACGAGAGAAACTACTCC 4352
Query 3580 AATTCCTGAAGAAACCATGAATGAGTCCTCTGAGAACAGGAAGGAGTATTTGAA-CATTG 3638
|||||||||||||||||| |||||||| |||||||||||||||||||| || || |||||
Sbjct 4353 AATTCCTGAAGAAACCATCAATGAGTCTTCTGAGAACAGGAAGGAGTA-TTCAAGCATTG 4411
Query 3639 ATGAATCAGCTACGTTATCCGAGAGGCAAGTAAGAAGAGAACCAACCTTGATTTTCAGAA 3698
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 4412 ATGAATCAGCTACGTTATCCGAGATGCAAGTAAGAAGAGAACCAACCTTGATTTTCAGAA 4471
Query 3699 CACAAGTGAAGCCTACGAAGCATGACATGAAAGAGAATGCACCAAACTCAAAGATTGTGC 3758
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4472 CACAAGTGAAGCCTACGAAGCATGACATGAAAGAGAATGCACCAAACTCAAAAATTGTGC 4531
Query 3759 ATAATCTTAACGTAACAGCTCCAAGAACTTCAAAGAGACCGCCTCTCCAAGACTTGAGCA 3818
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 4532 ATAATCTTAACGTAACAGCTCCAAGAACATCAAAGAGACAGCCTCTCCAAGACTTGAACA 4591
Query 3819 AGAACTAGAGTGACTGATTT-GCATATCT 3846
||||||||| |||| || || ||||||||
Sbjct 4592 AGAACTAGA-TGACGGAATTAGCATATCT 4619
Score = 876 bits (474), Expect = 0.0
Identities = 779/919 (85%), Gaps = 50/919 (5%)
Strand=Plus/Plus
Query 1030 AAACGTTCCTCGGCGTTCAAAACGAGGTTGC-AACGACATTAATGTGCTGA-TGGATAAG 1087
||| |||||| ||||||| ||||| |||| ||||| | |||||||| | ||||||||
Sbjct 898 AAA-GTTCCTAGGCGTTCGAAACG-TCTTGCGAACGATGTAAATGTGCT-ACTGGATAAG 954
Query 1088 CGGCCCATTAAGGCTGTGAAGCGTGATGACCTTG-GAGTAAAAAAGGCTCCAAAACACTC 1146
| ||| ||||||||||||| | |||| | | || ||| ||||||||||||||||| ||
Sbjct 955 AGACCCGTTAAGGCTGTGAAACCTGATTATC-TGAAAGTCAAAAAGGCTCCAAAACAGTC 1013
Query 1147 TAGGCAACGTGTA-AAGAGTCTCAGTGAACGCCTAGTAGATGGCCAAGCTCAAAAGGGTG 1205
||||| || || | |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1014 TAGGCGACTTG-AGAAGAGTCTCAGTGAACTCCTAATAGATGGCCAAGCTCAAAAGGGTG 1072
Query 1206 ATAAACAACCAAAGAGAACTTTTGGAAATGATCGTGAGGGTAAAAAGCTTCTCCAAACTT 1265
||||||| | || | |||||||||||| ||||||||||||||||||||| | || ||
Sbjct 1073 ATAAACAGC----GA-A-CTTTTGGAAATGGTCGTGAGGGTAAAAAGCTTCTACGAAGTT 1126
Query 1266 CGAAGCACACTGCATCAGATAAAATGTTGGGTCAAGCACTGAGTGATTCACTGAAAAGTT 1325
|||| |||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 1127 CGAAACACACTGCATCAAATAATATGTTGGGTCAAGCACTGAGTAATTCACTGAAACGTT 1186
Query 1326 GTTCAGTTATTGACTGCGAACGAGATGGAGT-T--G--G-TAATGTGAAGAAGTCAAATG 1379
|||||||||||||| | ||||||| |||||| | | | | ||||||||||||||||||
Sbjct 1187 GTTCAGTTATTGACGGTGAACGAGCTGGAGTCTCTGTTGGTGATGTGAAGAAGTCAAATG 1246
Query 1380 TGAATGATGAAATGCAGGTCCGTGTTAGAGTTTCCAGGAGCTCTTTGAGGCATCATTCAT 1439
||||| ||||||||||| |||||||||||||| | |||| ||||| ||||||||||||||
Sbjct 1247 TGAATAATGAAATGCAGATCCGTGTTAGAGTTACTAGGAACTCTTCGAGGCATCATTCAT 1306
Query 1440 TTAAGGTTCCAATAGAGGTTGAAAGGAATCTGATTGATGAGAAGACAGATGAAACTCTTG 1499
|||||| |||||||||| ||||||||||||| ||||| ||||| | ||||||||| ||
Sbjct 1307 TTAAGGCTCCAATAGAGTTTGAAAGGAATCTTATTGAAAAGAAGTCGGATGAAACT-TT- 1364
Query 1500 ACTCTCTTGTCAAATCATCTAAAAGAGTTACTAGGATGACGAAGCGGGATAGATCAGCAG 1559
| ||||||||||||||||||| |||||||| || |||||||| ||||||||||
Sbjct 1365 --T-----GTCAAATCATCTAAAAGAGGTACTAGGAGGATGAAGCGGGGCAGATCAGCAG 1417
Query 1560 AGCCAGGGAAGGGCATAGAGACTGCATCAACTCAGAGCAATCTAACGCCaaaaaaaGGTT 1619
|||||||||||| |||||| | | | |||||||||||||||| |||||||| ||
Sbjct 1418 AGCCAGGGAAGGACATAGA-A----A-C---TCAGAGCAATCTAACGTCAAAAAAACTTT 1468
Query 1620 TGGATGAGTACATTCAGTTTGACCAAGAAGAAGGAGGTGGTGCTAATGTGGAA-TCTCGA 1678
|| ||||||| | ||||||||| |||||||||| | ||| |||||||||||| | | ||
Sbjct 1469 TGAATGAGTATACTCAGTTTGAGCAAGAAGAAGCATGTGACGCTAATGTGGAAGT-TAGA 1527
Query 1679 GGCTCTTCCAAGAAGTCAAAGACAAGGAATCAAGAATGTGTTAAGGATATGCCACACGGA 1738
||||| ||||||||| ||||||| | |||||||||||| ||||||||||| ||||| | |
Sbjct 1528 GGCTCCTCCAAGAAGGCAAAGACGATGAATCAAGAATGCGTTAAGGATATACCACAAGTA 1587
Query 1739 ATGATTGAGAACTCACCTTTTTTC-TCAGAAACCAAAGCTGCAGAATCTGTTGTGAT-GA 1796
|||| |||||||||||||| || | || ||||||| |||||| ||||||||| |||| |
Sbjct 1588 ATGACTGAGAACTCACCTTCTT-CATCCGAAACCATAGCTGCGGAATCTGTTATGATTG- 1645
Query 1797 CTACTGAGAATGTTTTGGATTCTACTCTGGAAAAATCAGTTGATAGTTCTCAAAGAACAA 1856
| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 1646 -T--TGAGAATGTTTTGGATTCTTCACCGGAAAAATCAGTTGATAGTTCTCAAAGAACAA 1702
Query 1857 ACATTCAAGAGTTGAATTCTGAACTTATGGAAGGAAAT-AGTGAAGAGAAACTTGAGCGA 1915
||| ||||||||||||||| ||| ||||||||||||| | |||||||||||||||| ||
Sbjct 1703 ACACTCAAGAGTTGAATTCGGAAGTTATGGAAGGAAAACA-TGAAGAGAAACTTGAGGGA 1761
Query 1916 GATACAGTTTCGATGGTTG 1934
|| ||||||| ||||||||
Sbjct 1762 GACACAGTTTTGATGGTTG 1780
Score = 521 bits (282), Expect = 2e-146
Identities = 449/524 (86%), Gaps = 34/524 (6%)
Strand=Plus/Plus
Query 26 ATGGATTTTCATGGAATGAAGAGGAATGATCTACAAGCTTTATGCAAAAAGCATGGAATC 85
||| |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 1 ATGAATTTTCATGGAATGAAGAGGAAGGATCTACAAGCTCTATGCAAAAAGAATGGAATC 60
Query 86 CCAGCAAATTTGAAGAACACTGAGATGGCTAATAGGCTCGTTTCTGTTCT-C-G-A-GAA 141
||||||||||||||||||| ||||||||||| ||| |||| ||||||||| | | | |||
Sbjct 61 CCAGCAAATTTGAAGAACATTGAGATGGCTACTAGACTCGCTTCTGTTCTCCAGAAGGAA 120
Query 142 A--G-A--AACTTTAACGGATACGATAAGTTTGTCTGAGGATTCTGTTGAGGTTCTTGAG 196
| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ACTGAAGGAACTTTAACGGATACGATAAGTTTGTCTGAGGATTCTGTTGATGTTCTTGAG 180
Query 197 GATGATATAGTTGTTAAGAGAGTAAGATTCAGTCCTGAGAATGAAGTTTTTGAATTCACT 256
|||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GATGATGTAGCTGTTAAGAAAGTAAGATTCAGTCCTGAGAATGAAGTATTTGAATTCACT 240
Query 257 CGATCTGTCAAGAGATGTCAGCGGAAGAATGTGAGAACGCTTAGCAAAGGGAATGTTCAA 316
|| ||| ||||||||||||||| | ||| || | | |||||||| || | ||
Sbjct 241 CGGTCTCTCAAGAGATGTCAGC-G--GAA-GT----ATG-TTAGCAAAAGG-A-----AA 285
Query 317 GATCTTCAAGAAAGTGGAATAGAGCTAAGGCGGTCTACGCGAATTGTGGCTAAGGGGAAT 376
| ||||||||||||||||||||||||||||||| | ||||| ||| ||||| |||
Sbjct 286 G---TTCAAGAAAGTGGAATAGAGCTAAGGCGGTCAAAGCGAAGTGTTGCTAAAGGG--- 339
Query 377 AAAACAGTAGCTGGATCTAATGTAAACGAGTCAACCGCAAGAAGAGGTCGTTGGTTTGAT 436
||| || |||||||||||| || ||||||||||| | ||||||||||| ||| ||||
Sbjct 340 AAAGCAATAGCTGGATCTAGTGAAAACGAGTCAAACACAAGAAGAGGTAACCGGTCTGAT 399
Query 437 GTTACAAAAGGTCT-T-AAGGTCCCAAGGCCGTTGAAACGAATTGGATCTAGTGGTACTA 494
||||| ||||| || | |||||||||||| || |||||||| ||| |||| |||| ||
Sbjct 400 GTTAC-AAAGG-CTATCGAGGTCCCAAGGCGGTCGAAACGAAGTGGCTCTACCGGTAGTA 457
Query 495 GTCAAGAAGACTGTAAAGTAACGGAGTTGATGGCTTTGGAACAG 538
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GTCAAGAAGACTGTAAAGTAACGGAGTTGATGGCTTTGGAACAG 501
Score = 237 bits (128), Expect = 6e-61
Identities = 187/214 (87%), Gaps = 10/214 (5%)
Strand=Plus/Plus
Query 766 GGATCAGAGAAGGTCAATAAGGCTTAAAGCTAGAGCTGCAAACCCATCTATGGAAGGTGA 825
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 699 GGATCAGAGAAGGTCAATAAGGCTTAAAGCTAGAGCTGCAAACCAATCAATGGGAGGTGA 758
Query 826 GTCATCCGATGGTAGACCTTTATGTTATGCTAGGGAAAGTAAAGAAGAAATAAAGACTAC 885
|||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||| |
Sbjct 759 GTCATCCGATGGTAGACCCTTATGCTCTGCTAAGGAAACTAAAGAAGAAATAAAGA-T-- 815
Query 886 TAAGCAGTCAAAAAGATCTACGGTGGTTAATAGTCGAGAAGGTGAGCTTGTTAA-ATATA 944
||||||||||||||||||||||||||| | ||||| | ||| |||||||| | | | |
Sbjct 816 TAAGCAGTCAAAAAGATCTACGGTGGTCAGTAGTCAAAAAG---AGCTTGTTGAGAGA-A 871
Query 945 AAGCAAAGGAGCCTTT-GATAGATTGTAAGGTTC 977
|||||||||||||||| | ||||| | || ||||
Sbjct 872 AAGCAAAGGAGCCTTTAG-TAGATAGCAAAGTTC 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 191587555317
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5