BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927080
Length=338
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76860.1 | Symbols: | Small nuclear ribonucleoprotein famil... 580 2e-165
AT1G21190.1 | Symbols: | Small nuclear ribonucleoprotein famil... 333 6e-91
> AT1G76860.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr1:28854414-28855750 REVERSE LENGTH=590
Length=590
Score = 580 bits (314), Expect = 2e-165
Identities = 328/335 (98%), Gaps = 0/335 (0%)
Strand=Plus/Plus
Query 4 GTATCTCTGTCTACACAATGTCCGGCGAGGAAGACGCCACCGTGAGGGAGCCACTAGATC 63
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 97 GTATCTCTGTCTACACGATGTCCGGCGAGGAAGAAGCCACCGTGAGGGAGCCACTAGATC 156
Query 64 TGATTAGGCTGAGTCTCGACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAGCTTC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 157 TGATTAGGCTGAGTCTCGACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAACTTC 216
Query 124 GCGGCAAGCTTCACGCGTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GCGGCAAGCTTCACGCGTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAA 276
Query 184 CTATCACAACAGTAGAAATCGATGACGAGACATATGAAGAGATTGTTCGGACTACAAAGC 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 CTATCACTACAGTAGAAATCGATGACGAGACATATGAAGAGATTGTTCGGACTACAAAGC 336
Query 244 GGACGATTGAGTTTCTATTTGTGAGAGGAGATGGAGTGATATTGGTGTCTCCACCGCTGA 303
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GGACGATTGAGTTTCTATTCGTGAGAGGAGATGGAGTGATATTGGTGTCTCCACCGCTGA 396
Query 304 GGACAGCAACCTGAGTTAAAACTCAAATCTTTTGT 338
|||||||| |||||||| |||||||||||||||||
Sbjct 397 GGACAGCAGCCTGAGTTCAAACTCAAATCTTTTGT 431
> AT1G21190.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr1:7419678-7420903 REVERSE LENGTH=652
Length=652
Score = 333 bits (180), Expect = 6e-91
Identities = 253/289 (88%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 20 AATGTCCGGCGAGGAAGACGCCACCGTGAGGGAGCCACTAGATCTGATTAGGCTGAGTCT 79
|||||| | |||||||||||||||||| || |||||||| ||||||||| || ||||| |
Sbjct 47 AATGTCAGTCGAGGAAGACGCCACCGTTAGAGAGCCACTCGATCTGATTCGGTTGAGTAT 106
Query 80 CGACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAGCTTCGCGGCAAGCTTCACGC 139
||| ||||| ||||||||||||||||| || ||||| || || |||||||||||||||||
Sbjct 107 CGAAGAGAGGATCTATGTCAAGCTCCGATCTGACCGTGAACTCCGCGGCAAGCTTCACGC 166
Query 140 GTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAACTATCACAAC-AGTAG 198
||||||||||||||||||||||||||||||||||||||||| ||| || || | |||
Sbjct 167 TTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAGGTTATTACGACTA-TAG 225
Query 199 AAATCGATGACGAGACATATGAAGAGATTGTTCGGACTACAAAGCGGACGATTGAGTTTC 258
||||||| ||||||||||||||||||||||||||||| || ||||| ||| | |||||
Sbjct 226 AAATCGACGACGAGACATATGAAGAGATTGTTCGGACAACGAAGCGAACGGTACCGTTTC 285
Query 259 TATTTGTGAGAGGAGATGGAGTGATATTGGTGTCTCCACCGCTGAGGAC 307
|||| ||||||||||||||||||||||||||||| || || |||||||
Sbjct 286 TATTCGTGAGAGGAGATGGAGTGATATTGGTGTCACCGCCTTTGAGGAC 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15784073186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5