BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927081
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76870.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1360 0.0
> AT1G76870.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription factors
(TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76
species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi -
14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source:
NCBI BLink). | chr1:28857250-28858407 FORWARD LENGTH=1158
Length=1158
Score = 1360 bits (736), Expect = 0.0
Identities = 1050/1191 (88%), Gaps = 64/1191 (5%)
Strand=Plus/Plus
Query 62 GAAAATGCT--CATGGACGCTTTGATTCTCAAGTTGGTTCTTCTATGAGAGATCTTCGTC 119
|||| |||| || ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 8 GAAATTGCTCGCAAGGACGCTTTGATTCTCAAG-T--TTCTTCTATGAGAGATCTTCGTC 64
Query 120 CAAATGCTATGCATCAGAATC----A-AA-ACCATCCAAATTCTCGACATGACTCGGGCT 173
|||||||||| ||||||||| | || ||||||||||||||||||| ||||| ||||
Sbjct 65 CAAATGCTATAAATCAGAATCAGAAACAACACCATCCAAATTCTCGACAAGACTCAGGCT 124
Query 174 GTGACATTACTATGGATGCACATCGCAACAATGTCGACAGAGGGAAGAAATCGATGAGTG 233
| ||| |||||||||| ||| || |||||||||||||||||| |||||||| |||||||
Sbjct 125 TTAACAATACTATGGATACACGTCACAACAATGTCGACAGAGGAAAGAAATCAATGAGTG 184
Query 234 AAGAGGATGAACTATGTTTG---AGTTGTGATGGTCAAAACAAGTCCAA-GAACAACTCT 289
|||| ||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||
Sbjct 185 AAGATGATGAACTATGTTTGTTAAGTAGTGATGGTCAAAACAAGTCCAAGGAA-AACTCT 243
Query 290 CCTTGGCAACGTGTTAAATGGATGGATAAGATGGTGAAGCTGATGATAACTGCTCTTTCT 349
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 244 CCTTGGCAACGTGTGAAATGGATGGATAAGATGGTGAAGCTAATGATAACTGCTCTTTCT 303
Query 350 TATATCGGTGAGGACTCTAGTACTTCCGAGGTTGGTTGCGGAAGGAAATTTGCGGTTTTG 409
||||||||||| |||||| | || | | | | || ||||||||| ||||||
Sbjct 304 TATATCGGTGAAGACTCT-G--GTT-C-----T-GAT----AA-GAAATTTGCAGTTTTG 348
Query 410 CAGAAGAAAGGTAAGTGGAGATCAGTTTCTAAAGTCATGGATGAAAGAGGTTATCGTGTT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 349 CAGAAGAAAGGTAAGTGGAGATCAGTTTCTAAAGTCATGGATGAAAGAGGTTATCATGTT 408
Query 470 TCCCCCCAGCAATGCGAGGATAAGTTTAATGATCTTAATAAGAGGTATAAGAAGCTTAAT 529
|| || |||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 409 TCGCCGCAGCAATGTGAAGATAAGTTTAATGATCTTAATAAGCGGTATAAGAAGCTTAAT 468
Query 530 GAGATGCTTGGTAGGGGAACTTCTTGTGAGGTTGTTGAGAATCCTGCACTCTTGGATAAG 589
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 469 GAGATGCTTGGTAGAGGAACTTCTTGTGAGGTTGTTGAGAATCCTTCACTCTTGGATAAG 528
Query 590 ATTGATTACTTGAATGAGAAAGAGAAAGATGAAGTTAGGAAAATCATGAGTTCCAAACAT 649
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 529 ATTGATTACTTGAATGAGAAAGAGAAAGATGAAGTTAGGAGAATCATGAGCTCTAAACAT 588
Query 650 CTTTTCTATGAGGAGATGTGTTCGTATCATAACGGAAACAGATTGCATTTGCCTCATGAC 709
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 589 CTTTTCTATGAAGAGATGTGTTCTTATCATAACGGAAACAGATTGCATTTGCCTCATGAC 648
Query 710 CCTGCAGTACAGAGATCCCTTCACTTGATTACACTCGGAAGCCGtgatgatcatgataat 769
||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 649 CCTGCGGTACAGAGATCTCTTCACTTGATTACGCTTGGAAGCCGTGATGATCATGATAAT 708
Query 770 gatgaacatgggaaacaccagaatgaagatcttgatgatgaggatgaaGGTGAGGAACAC 829
|||||||||||||||||||| || ||||||||||||||||| ||||| ||||||| |
Sbjct 709 GATGAACATGGGAAACACCAAAACGAAGATCTTGATGATGATGATGACTATGAGGAAGAT 768
Query 830 CATTTGTCTCATGGGGATTGTAGAGGAGTCCATGATGACCGTCCCTTGAAGAGGTTAAGA 889
||| | |||| | || || || | || |||||| |||||||||||||||
Sbjct 769 CAT--G----ATGGAGCTT-TA-AG---T----GA---CCGTCCTTTGAAGAGGTTAAGA 810
Query 890 CAAAGCCTGAGCCATGAAGAT------C--C-GAATAAGGGTTATGATGTCCCTCTT-TT 939
||||||| ||||||||||||| | | |||||||||||||||||||||| | ||
Sbjct 811 CAAAGCCAGAGCCATGAAGATGTTGGTCATCCGAATAAGGGTTATGATGTCCCT-TGCTT 869
Query 940 GCCTCGTTCCCAAGCTGATGTGAGTGGAGGAATGTCACTAGACAGTGAG-AAAGGTACTG 998
||||||||||||||||||||||| | ||||||| || ||||| ||| || |||| | |||
Sbjct 870 GCCTCGTTCCCAAGCTGATGTGAATCGAGGAATATCGCTAGATAGT-AGGAAAGCTGCTG 928
Query 999 GCTTACAGAGGCAGCGGATTGAGTCTAAGTCTCTT-GAGTTAGAAGGACGCAGGCTTCAG 1057
||||||||||||||| |||||||||||||||| || |||||||||||||| | |||||||
Sbjct 929 GCTTACAGAGGCAGCAGATTGAGTCTAAGTCT-TTAGAGTTAGAAGGACGAAAGCTTCAG 987
Query 1058 ATTCAAGCGGAGTTGATGGAATTGGAGAGACAACAATTTAGGTGGGAGGTGTTTAGTAAG 1117
|||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 988 ATTCAAGCGGAGATGATGGAACTGGAGAGACAACAATTCAAGTGGGAGGTGTTTAGTAAG 1047
Query 1118 AAAAGAGACCAGAAGCTCGAAAAAATGCGAATGGAGAACGAAAGGATGAAACTTGAGAAT 1177
| |||||| |||||||| | |||||| ||||||| ||||||||||||||||||||||||
Sbjct 1048 AGAAGAGAGCAGAAGCTTGCGAAAATGAGAATGGAAAACGAAAGGATGAAACTTGAGAAT 1107
Query 1178 GAAAGGATGACTCTTGAACTGAAACGAATTGAATTAGGTGCTAAATTGTGA 1228
|||||||||| |||||||||||||||||| || || |||||||||||||||
Sbjct 1108 GAAAGGATGAGTCTTGAACTGAAACGAATAGAGTTGGGTGCTAAATTGTGA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5