BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927083
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76890.2 | Symbols: GT2, AT-GT2 | Duplicated homeodomain-lik... 2791 0.0
AT1G76892.1 | Symbols: | other RNA | chr1:28873271-28874758 FO... 2313 0.0
> AT1G76890.2 | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like
superfamily protein | chr1:28873059-28875292 REVERSE LENGTH=1969
Length=1969
Score = 2791 bits (1511), Expect = 0.0
Identities = 1690/1777 (95%), Gaps = 10/1777 (1%)
Strand=Plus/Plus
Query 1 TTCAAATTCGAGTCTTAAG-TATGTCTGGAAACTCTTCAGGACTGTTAGAGAGTTCCGGT 59
||||| |||||||||| || ||||||||||||||| ||||||||||||||| || ||
Sbjct 70 TTCAAGTTCGAGTCTT-AGCTATGTCTGGAAACTCAGAAGGACTGTTAGAGAGCTCAGGC 128
Query 60 GGCGGCGTGGGAGGTTCCGGT-GAGGAGGAAAGAGATATGAAGCTGGAGGAAACCGGCGA 118
|||||||||||||||||| || |||||||||| |||||||||| ||||||||||||| ||
Sbjct 129 GGCGGCGTGGGAGGTTCC-GTCGAGGAGGAAAAAGATATGAAGATGGAGGAAACCGGTGA 187
Query 119 GGGAGCCGGTGGCGGAGGAAACCGGTGGCCAAGACCGGAAACTTTAGCTCTATTGAGAAT 178
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 188 AGGAGCCGGCAGCGGAGGAAACCGGTGGCCAAGACCAGAGACTTTAGCTCTATTGAGAAT 247
Query 179 ACGTTCGGAGATGGATAAAGCTTTTCGTGACTCTACTCTTAAAGCTCCCTTATGGGAAGA 238
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 248 ACGTTCAGAGATGGATAAAGCTTTTCGTGACTCTACTCTCAAAGCTCCCTTATGGGAAGA 307
Query 239 AATCTCCAGGAAAATGATGGAGCTTGGATACAAGAGAAGTTCAAAGAAATGCAAGGAGAA 298
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 308 AATTTCCAGGAAAATGATGGAGCTTGGTTACAAGAGAAGTTCAAAGAAATGCAAGGAGAA 367
Query 299 GTTCGAGAACGTGTACAAGTACCACAAACGTACCAAAGAAGGTCGTACCGGGAAATCCGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GTTCGAGAACGTGTACAAGTACCACAAACGTACCAAAGAAGGTCGTACCGGGAAATCCGA 427
Query 359 AGGCAAAACGTACCGtttttttGAAGAGTTAGAAGCTTTCGAGACTCTCAGTTCCTATCA 418
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGGCAAAACTTACCGGTTTTTCGAAGAGTTAGAAGCTTTCGAGACTCTCAGTTCCTATCA 487
Query 419 ACCTGAACCTGAGTCGCAACCAGCGAAATCTTCTGCAGCCG-TCACGACCGCCCCCGCAA 477
||||||||||||||||||||| |||||||||||||||| | |||||| ||| |||||||
Sbjct 488 ACCTGAACCTGAGTCGCAACCCGCGAAATCTTCTGCAG-TGATCACGAACGCGCCCGCAA 546
Query 478 CCACTTCCTTGATACCATGGATAAGCTCTAGCAATCCATCAATCGAAAAAATTTCTTCAC 537
|| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 547 CCTCTTCCTTGATACCATGGATTAGCTCTAGCAATCCATCAACCGAAAAAAGTTCTTCAC 606
Query 538 CGTTGAAACATCATCATCAGGTTAGTGCACAACCCATTACCACAAACCCTACCTTCCTCG 597
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 607 CGTTGAAACATCATCATCAGGTTAGTGTACAACCCATCACCACAAACCCTACCTTCCTCG 666
Query 598 CCAAGCAACCATCTTCTACGACGCCTTTCCCTTTCTACAGTAACAACAATACTACTACTG 657
|||||||||||||||| ||||||||||| ||||| || || | |||||||||||||||||
Sbjct 667 CCAAGCAACCATCTTCCACGACGCCTTTTCCTTTTTATAGCAGCAACAATACTACTACTG 726
Query 658 TTAGCCAGCCGCCGATTTCAAATGACCTGATGAACAATGTTTCATCGCTGAATCTTTTCT 717
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 727 TTAGCCAGCCGCCAATTTCAAATGACTTGATGAACAATGTTTCATCGCTGAATCTTTTCT 786
Query 718 CGAGCTCAACTTCTTCATCTACTGCATCTGACGAGGAAGAAGATCATCATCAGGGAAAGA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 787 CGAGCTCAACTTCTTCATCTACTGCATCTGACGAGGAAGAAGATCATCATCAGGTTAAGA 846
Query 778 GATCGAGAAAGAAGAGGAAGTATTGGAAAGGACTGTTTACGAAGTTGACAAAAGAGTTGA 837
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 847 GCTCGAGAAAGAAGAGGAAGTATTGGAAAGGGTTGTTTACGAAGTTGACAAAAGAGTTAA 906
Query 838 TGGAGAAACAAGAGAAGATGCAAAAAAGGTTCTTGGAAACACTGGAGAATCGCGAGAAAG 897
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 907 TGGAGAAACAAGAGAAGATGCAAAAAAGGTTCTTGGAAACACTGGAGTATCGTGAGAAAG 966
Query 898 AGAGAATCACAAGAGAAGAAGCTTGGAGGGTCCAAGAGATAGCGAGAATCAACAGAGAAC 957
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 967 AGAGAATCTCAAGAGAAGAAGCTTGGAGGGTCCAAGAGATAGGGAGAATCAACAGAGAAC 1026
Query 958 ACGAAATTTTAATCCATGAGAGGTCCAATGCTGCAGCTAAAGACGCTGCAATCATATCCT 1017
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 ACGAAACATTAATCCATGAGAGGTCCAATGCTGCAGCTAAAGACGCTGCAATCATATCCT 1086
Query 1018 TCTTACATAAAATCTCAGGAGGACAACCACAACAACCGCAACAGCATAATCATAAACCAT 1077
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1087 TCTTACACAAAATCTCAGGAGGACAACCACAACAACCGCAACAACATAATCATAAACCAT 1146
Query 1078 CGCAAAGGAAACAATATCGAAGCGATCATTCAATAACGTTTGAGAGTAAAGAGCCAAGGC 1137
| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1147 CACAAAGGAAACAATATCAAAGCGATCATTCAATAACGTTTGAGAGTAAAGAGCCGAGGG 1206
Query 1138 CGGTACTATTGGATACAACAATGAAGATGGGGAATTACGATAACAACCATTCGGTATCTC 1197
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1207 CGGTTCTATTGGATACAACAATAAAGATGGGGAATTACGATAACAATCATTCGGTGTCTC 1266
Query 1198 CTAGTTCTTCAAGATGGCCTAAAACAGAGGTCGAGGCCTTGATAAGGATAAGGAAGAATC 1257
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1267 CTAGTTCTTCAAGATGGCCTAAAACCGAGGTCGAGGCCTTGATAAGGATAAGAAAGAATC 1326
Query 1258 TTGAAGCTAACTATCAAGAAAACGGTACTAAGGGGCCATTATGGGAAGAGATCTCTGCAG 1317
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1327 TTGAAGCTAACTATCAAGAAAACGGTACTAAGGGACCATTATGGGAAGAGATCTCTGCAG 1386
Query 1318 GGATGAGAAGATTGGGATACAATAGAAGCGCGAAACGATGCAAAGAGAAGTGGGAAAACA 1377
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1387 GGATGAGAAGATTGGGATACAATAGAAGCGCGAAACGCTGCAAAGAGAAGTGGGAAAACA 1446
Query 1378 TAAACAAGTACTTTAAGAAAGTCAAAGAAAGCAACAAGAAACGTCCCCTTGATTCCAAGA 1437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 TCAACAAGTACTTTAAGAAAGTCAAAGAAAGCAACAAGAAACGTCCCCTTGATTCCAAGA 1506
Query 1438 CTTGCCCTTATTTTCACCAGCTCGAAGCTTTATACAACGAGAGGAACAAAAGTGGGACAA 1497
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1507 CTTGCCCTTATTTTCACCAGCTCGAAGCTTTGTACAACGAGAGGAACAAAAGTGGGGCAA 1566
Query 1498 TGCCATTGCCATTGCCTCTAATGGTGACTCCTCAGAGACAGTTGCTTCTCTCACAAGAAA 1557
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1567 TGCCATTGCCATTGCCTCTAATGGTGACTCCACAGAGACAGTTGCTTCTCTCGCAAGAAA 1626
Query 1558 CCCAGACTGAGTCTGAGACTGATCAAAGGGACAAAGTTGGTGACAaagaagatgaagaag 1617
||||||| |||| |||||||||||| ||||| ||||||||||| ||||||||| ||||
Sbjct 1627 CCCAGACCGAGTTTGAGACTGATCAGAGGGAAAAAGTTGGTGATAAAGAAGAT---GAAG 1683
Query 1618 aagaaggagagagtgaggaagatgaatacgatgaagaagaagagggagaaggagacaatg 1677
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 AAGAAGGAGAGAGTGAAGAAGATGAATACGATGAAGAAGAAGAGGGAGAAGGAGACAATG 1743
Query 1678 agacaagTGAGTTCGAGATTGTGTTGAACAAAACATCTTCACCTATGGACATTAACAATA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 AGACAAGTGAGTTCGAGATTGTGTTGAACAAAACATCTTCACCTATGGACATTAACAATA 1803
Query 1738 ATCTTTTCACCTAAGTGGTTT-ATAATCATTTTATTA 1773
||||||||||||||||||||| |||||||||||||||
Sbjct 1804 ATCTTTTCACCTAAGTGGTTTTATAATCATTTTATTA 1840
> AT1G76892.1 | Symbols: | other RNA | chr1:28873271-28874758
FORWARD LENGTH=1488
Length=1488
Score = 2313 bits (1252), Expect = 0.0
Identities = 1383/1447 (96%), Gaps = 5/1447 (0%)
Strand=Plus/Minus
Query 246 AGGAAAATGATGGAGCTTGGATACAAGAGAAGTTCAAAGAAATGCAAGGAGAAGTTCGAG 305
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1443 AGGAAAATGATGGAGCTTGGTTACAAGAGAAGTTCAAAGAAATGCAAGGAGAAGTTCGAG 1384
Query 306 AACGTGTACAAGTACCACAAACGTACCAAAGAAGGTCGTACCGGGAAATCCGAAGGCAAA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 AACGTGTACAAGTACCACAAACGTACCAAAGAAGGTCGTACCGGGAAATCCGAAGGCAAA 1324
Query 366 ACGTACCGtttttttGAAGAGTTAGAAGCTTTCGAGACTCTCAGTTCCTATCAACCTGAA 425
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 ACTTACCGGTTTTTCGAAGAGTTAGAAGCTTTCGAGACTCTCAGTTCCTATCAACCTGAA 1264
Query 426 CCTGAGTCGCAACCAGCGAAATCTTCTGCAGCCG-TCACGACCGCCCCCGCAACCACTTC 484
|||||||||||||| |||||||||||||||| | |||||| ||| ||||||||| ||||
Sbjct 1263 CCTGAGTCGCAACCCGCGAAATCTTCTGCAGT-GATCACGAACGCGCCCGCAACCTCTTC 1205
Query 485 CTTGATACCATGGATAAGCTCTAGCAATCCATCAATCGAAAAAATTTCTTCACCGTTGAA 544
||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1204 CTTGATACCATGGATTAGCTCTAGCAATCCATCAACCGAAAAAAGTTCTTCACCGTTGAA 1145
Query 545 ACATCATCATCAGGTTAGTGCACAACCCATTACCACAAACCCTACCTTCCTCGCCAAGCA 604
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1144 ACATCATCATCAGGTTAGTGTACAACCCATCACCACAAACCCTACCTTCCTCGCCAAGCA 1085
Query 605 ACCATCTTCTACGACGCCTTTCCCTTTCTACAGTAACAACAATACTACTACTGTTAGCCA 664
||||||||| ||||||||||| ||||| || || | ||||||||||||||||||||||||
Sbjct 1084 ACCATCTTCCACGACGCCTTTTCCTTTTTATAGCAGCAACAATACTACTACTGTTAGCCA 1025
Query 665 GCCGCCGATTTCAAATGACCTGATGAACAATGTTTCATCGCTGAATCTTTTCTCGAGCTC 724
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GCCGCCAATTTCAAATGACTTGATGAACAATGTTTCATCGCTGAATCTTTTCTCGAGCTC 965
Query 725 AACTTCTTCATCTACTGCATCTGACGAGGAAGAAGATCATCATCAGGGAAAGAGATCGAG 784
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 964 AACTTCTTCATCTACTGCATCTGACGAGGAAGAAGATCATCATCAGGTTAAGAGCTCGAG 905
Query 785 AAAGAAGAGGAAGTATTGGAAAGGACTGTTTACGAAGTTGACAAAAGAGTTGATGGAGAA 844
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 904 AAAGAAGAGGAAGTATTGGAAAGGGTTGTTTACGAAGTTGACAAAAGAGTTAATGGAGAA 845
Query 845 ACAAGAGAAGATGCAAAAAAGGTTCTTGGAAACACTGGAGAATCGCGAGAAAGAGAGAAT 904
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 844 ACAAGAGAAGATGCAAAAAAGGTTCTTGGAAACACTGGAGTATCGTGAGAAAGAGAGAAT 785
Query 905 CACAAGAGAAGAAGCTTGGAGGGTCCAAGAGATAGCGAGAATCAACAGAGAACACGAAAT 964
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 784 CTCAAGAGAAGAAGCTTGGAGGGTCCAAGAGATAGGGAGAATCAACAGAGAACACGAAAC 725
Query 965 TTTAATCCATGAGAGGTCCAATGCTGCAGCTAAAGACGCTGCAATCATATCCTTCTTACA 1024
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 ATTAATCCATGAGAGGTCCAATGCTGCAGCTAAAGACGCTGCAATCATATCCTTCTTACA 665
Query 1025 TAAAATCTCAGGAGGACAACCACAACAACCGCAACAGCATAATCATAAACCATCGCAAAG 1084
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 664 CAAAATCTCAGGAGGACAACCACAACAACCGCAACAACATAATCATAAACCATCACAAAG 605
Query 1085 GAAACAATATCGAAGCGATCATTCAATAACGTTTGAGAGTAAAGAGCCAAGGCCGGTACT 1144
||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 604 GAAACAATATCAAAGCGATCATTCAATAACGTTTGAGAGTAAAGAGCCGAGGGCGGTTCT 545
Query 1145 ATTGGATACAACAATGAAGATGGGGAATTACGATAACAACCATTCGGTATCTCCTAGTTC 1204
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 544 ATTGGATACAACAATAAAGATGGGGAATTACGATAACAATCATTCGGTGTCTCCTAGTTC 485
Query 1205 TTCAAGATGGCCTAAAACAGAGGTCGAGGCCTTGATAAGGATAAGGAAGAATCTTGAAGC 1264
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 484 TTCAAGATGGCCTAAAACCGAGGTCGAGGCCTTGATAAGGATAAGAAAGAATCTTGAAGC 425
Query 1265 TAACTATCAAGAAAACGGTACTAAGGGGCCATTATGGGAAGAGATCTCTGCAGGGATGAG 1324
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 424 TAACTATCAAGAAAACGGTACTAAGGGACCATTATGGGAAGAGATCTCTGCAGGGATGAG 365
Query 1325 AAGATTGGGATACAATAGAAGCGCGAAACGATGCAAAGAGAAGTGGGAAAACATAAACAA 1384
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 364 AAGATTGGGATACAATAGAAGCGCGAAACGCTGCAAAGAGAAGTGGGAAAACATCAACAA 305
Query 1385 GTACTTTAAGAAAGTCAAAGAAAGCAACAAGAAACGTCCCCTTGATTCCAAGACTTGCCC 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GTACTTTAAGAAAGTCAAAGAAAGCAACAAGAAACGTCCCCTTGATTCCAAGACTTGCCC 245
Query 1445 TTATTTTCACCAGCTCGAAGCTTTATACAACGAGAGGAACAAAAGTGGGACAATGCCATT 1504
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 244 TTATTTTCACCAGCTCGAAGCTTTGTACAACGAGAGGAACAAAAGTGGGGCAATGCCATT 185
Query 1505 GCCATTGCCTCTAATGGTGACTCCTCAGAGACAGTTGCTTCTCTCACAAGAAACCCAGAC 1564
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 184 GCCATTGCCTCTAATGGTGACTCCACAGAGACAGTTGCTTCTCTCGCAAGAAACCCAGAC 125
Query 1565 TGAGTCTGAGACTGATCAAAGGGACAAAGTTGGTGACAaagaagatgaagaagaagaagg 1624
|||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||| |
Sbjct 124 CGAGTTTGAGACTGATCAGAGGGAAAAAGTTGGTGATAAAGAAGATGAAGAAGAAG--G- 68
Query 1625 agagagtgaggaagatgaatacgatgaagaagaagagggagaaggagacaatgagacaag 1684
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 AGAGAGTGAAGAAGATGAATACGATGAAGAAGAAGAGGGAGAAGGAGACAATGAGACAAG 8
Query 1685 TGAGTTC 1691
|||||||
Sbjct 7 TGAGTTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5