BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927086
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76920.1 | Symbols: | F-box family protein | chr1:28892062-... 1845 0.0
> AT1G76920.1 | Symbols: | F-box family protein | chr1:28892062-28893676
FORWARD LENGTH=1615
Length=1615
Score = 1845 bits (999), Expect = 0.0
Identities = 1113/1168 (95%), Gaps = 7/1168 (1%)
Strand=Plus/Plus
Query 2 GGAGGAGGAAGAG-ACAACCATGGAATCGTCTCCGATCAACCGTCTTCCACCGGATTCTC 60
|||| |||||||| | ||||||||||||||||||| | ||| |||||||||| |||||||
Sbjct 214 GGAGAAGGAAGAGAAAAACCATGGAATCGTCTCCGGTAAACTGTCTTCCACCTGATTCTC 273
Query 61 TCCACCATATCTTCTCATCTCTTCCTCTCCGTGATATCATGATCTGCAGATCCGTGTGCA 120
||||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 274 TCCACCAGATCTTCTCATCTCTTCCTATTCGTGATATCATGATCTGCAGATCCGTCTGCA 333
Query 121 AGTTCTTTAACCAGCTTTTGACCTCTCAATGCTTCATAGAGATCATCTCAACTCGTCCGC 180
||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 334 AGTTCTTCAACCAGCTTTTGACCTCTCAGTGTTTCATAGAGATTATCTCAACTCGTCCGC 393
Query 181 CGTTGAATCTACTCGCTCTCCGACCTCCTCATCACCACCACAGTCACCGTCACAGCGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CGTTGAATCTACTCGCTCTCCGACCTCCTCATCACCACCACAGTCACCGTCACAGCGGAA 453
Query 241 ACGGACACGCAACGAACATCCGACCGTACATCCATGTATACGATCCAGAGCAGAATCAAT 300
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 454 ACGGACACGCAACGAATATCCGACCGTACATCCATGTATATGATCCAGAGCAGAATCAAT 513
Query 301 GGTTCAGATTCAATCTCGATTTCCTCCCTTTCCGATCTCCTCAGCCTGTAGCTTCTTCTA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 514 GGTTCAGATTCAATCTCGATTTCCTCCCTTTCCGATCTCCTCAGCCTGTAGCTTCTTCAA 573
Query 361 GCGGATTGATCTATCTTTGGGGAGATTCGATTGATTTAGCTGAGTCTAGCAAATCGCTCG 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 574 GCGGATTGATCTATCTTTGGGGAGATTCGATTGATTTAGCTGAATCTAGCAAATCGCTCG 633
Query 421 TCGCTTGTAATCCATTGACTCGTCAGTTTAAGGTTTTGCCTCAGCTTGGCTCGGCTTGGT 480
||||||||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 634 TCGCTTGTAATCCGTTAACTCGGCAGTTCAAGGTTTTGCCTCAGCTTGGCTCAGCTTGGT 693
Query 481 CACGCCATGGTACTGTTCTTGTTGATTCGGTGAATCGAGTCATGGTGCTCACTGAGCTCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CACGCCATGGTACTGTTCTTGTTGATTCGGTGAATCGAGTCATGGTGCTCACTGAGCTCG 753
Query 541 CTGCGTTGTATTACTCAGGTACTGTAGTTGCTAATCAATGGCTCAAATTCTCATCGAATT 600
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 754 CTGCGTTGTATTACTCAGGTACTGTAGTTGCTAACCAATGGCTCAAATTCTCGTCGAATT 813
Query 601 TACCATCGAAACCTAGAAGTCCTGTGTTAATGTCGAGCTCGGTTTTCGCATTGTGTGATG 660
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 814 TACCATCGAAACCTAGAAGTCCTGTGTTAATGTCTAGCTCGGTTTTCGCATTGTGTGATG 873
Query 661 TTGGATCTCCGTGGAGAAGCCAATGGAAGCTTTTCTCATGTAAATTGACGAATCTCACAA 720
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TTGGATCTCCATGGAGAAGTCAATGGAAGCTTTTCTCATGTAAATTGACGAATCTCACAA 933
Query 721 TCACTCATACCAATTGGGTTTGCTTGGAGAAACATGAATGGGGTGATATATTCGATATCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TCACTCATACCAATTGGGTTTGCTTGGAGAAACATGAATGGGGTGATATATTCGATATCA 993
Query 781 TTAAACGACCACGTTTGTTGCGCGGTAACGGAGACTCTAAGCTTCTGATGATCGGTGGTT 840
| |||||||| ||||| |||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 994 TCAAACGACCGCGTTTATTGCGCGGTAACGGTGATTCTAAGCTTCTTATGATCGGTGGAT 1053
Query 841 TGAAATCGACCTTTTCGTTGAACCCAGCTTGTTCGACGATTCTGATACTTAGG-TTGGAT 899
|||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||| ||
Sbjct 1054 TGAAATCGACGTTTTCGTTGAACCCGGCTTGTTCAACGATTCTGATACTTAGGCTTG-AT 1112
Query 900 TTAGAAAGCTTGGAATGGGAAGAAGCAGGTAGAATGCCGTTAGAGATGTACCGAGGTTTT 959
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CTAGAAAGCTTGGAGTGGGAAGAAGCAGGTAGAATGCCGTTAGAGATGTACCGAGGTTTT 1172
Query 960 CAAGAATCGAGTAAGTTCAAAGTTTTCGGAGGTGGAGATAGGGTTTACTTCTCTGCTAAA 1019
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1173 CAAGAATCGAGTAAGTTTAAAGTTTTTGGAGGTGGAGATAGGGTTTACTTCTCTGCTAAA 1232
Query 1020 AGAATGGGGAAGCTTGCAATGTGGGATTGTTGGGAAGGTTGGAGATGGATTGATGGTGTC 1079
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 1233 AGGATGGGGAAGCTTGCAATGTGGGATTGTTGGCAAGGTTGGAGATGGATTGAGGGCGTC 1292
Query 1080 CCTGGTTATGCAGATGGATTGTGTCGAGGTTTTGTGTTTGATGCTAAGCTTACAATGATG 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1293 CCTGGTTATGCAGATGGATTGTGTCGAGGTTTTGTGTTTGATGCTAAGCTTACATTGATG 1352
Query 1140 CCATGACAA-A-AAAGAAGAAGGTGCGT 1165
||||||||| | ||| || ||||| |||
Sbjct 1353 CCATGACAACAGAAA-AA-AAGGTCCGT 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5