BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927099
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77020.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 1953 0.0
> AT1G77020.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr1:28944843-28947031 REVERSE LENGTH=1517
Length=1517
Score = 1953 bits (1057), Expect = 0.0
Identities = 1134/1172 (97%), Gaps = 1/1172 (0%)
Strand=Plus/Plus
Query 4 ACATTTTTGATCTGATCATGGTGAAGGAAACAGTGTACTATGATGTTCTTGGTGTCACTC 63
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 149 ACATCTTTG-TCTGATCATGGTGAAGGAAACAGTGTATTATGATGTTCTTGGTGTCACTC 207
Query 64 CCTCTGCTTCTGAGGAAGAGATTCGCAAGGCTTATTACATCAAGGCAAGACAAGTTCATC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CCTCTGCTTCTGAGGAAGAGATTCGCAAGGCTTATTACATCAAGGCAAGACAAGTTCATC 267
Query 124 CTGATAAGAATCAAGGTGATCCTCTAGCTGCTGAAAAGTTTCAGGTTCTTGGTGAAGCTT 183
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CTGACAAGAATCAAGGTGATCCTCTAGCTGCTGAAAAGTTTCAGGTTCTTGGTGAAGCTT 327
Query 184 ACCAGGTTCTAAGTGATCCTGTTCATCGTGAAGCGTATGATCGGACTGGAAAATTCTCAG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 ACCAGGTTCTAAGTGATCCTGTTCATCGTGAAGCGTATGATCGGACTGGAAAATTCTCAG 387
Query 244 CTCCCAAAGAAACGATGGTTGATCCAACGGCTGTTTTCGCTCTTCTTTTCGGAAGTGAAC 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CTCCCAAAGAAACAATGGTTGATCCAACGGCTGTTTTCGCTCTTCTTTTCGGAAGTGAAC 447
Query 304 TATTCAAAGATTATATCGGTCACTTAGCTGTTGCATCAATGGCGTCCACTCAAATGGCTT 363
||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 448 TATTCGAGGATTATATCGGTCACTTGGCTGTTGCATCAATGGCTTCCACTCAAATGGCTT 507
Query 364 CTGAAATCGAAACCCCTGATCAGTTTCAAGACAAACTAAAGGCTGTTCAGAAAGAAAGAG 423
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 CTGAAATCGAAAACTCTGATCAGTTTCAAGACAAACTAAAGGCTGTTCAGAAAGAAAGAG 567
Query 424 AAGAAAACCTCGCAAGGTTTCTCAAAGATTTTCTTAGTCAATATGTCCATGGAGACAAAG 483
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 568 AAGAAAACCTTTCAAGGTTTCTCAAAGATTTTCTGAGTCAATATGTCCACGGAGACAAAG 627
Query 484 AAGGATTCATAAGCCGCGCAAAATCTGAAGCCAAGAGACTATCAGATGCAGCTTTTGGAG 543
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 628 AAGGATTCATAAGCCGCGCAGAATCTGAAGCCAAGAGACTTTCAGATGCAGCTTTTGGAG 687
Query 544 CGGATATGTTGCATACAATTGGATATGTATACACAAGACAAGCAGCTCAAGAACTTGGGA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CGGATATGTTGCATACAATTGGATATGTATACACAAGACAAGCAGCTCAAGAACTTGGGA 747
Query 604 AAAGAGCTCTTTACTTAGGAGTTCCATTTGTAGCTGAATGGGTTAGGAACAAAGGTCATT 663
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AGAGAGCTCTTTACTTAGGAGTTCCATTTGTAGCTGAATGGGTTAGGAACAAAGGTCATT 807
Query 664 CTTGGAAGTCACAGATTAGTGCAGCCAAAGGAGCTTTTCAGTTACTTCAGCTGCAAGAAG 723
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 808 CTTGGAAATCACAGATTAGTGCAGCTAAAGGAGCTTTACAGTTACTTCAGCTGCAAGAAG 867
Query 724 AGAGTAACCGGAGATTAAAGAAAGATGGGGCTAGTCCAGCGAATGAGCTAGAGTCTCATA 783
||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 868 AGAGTAACCGGAGATTAAAGAAAGATGGGACTAGTCCAGCAAATGAGTTAGAGTCTCATA 927
Query 784 TTCAGACCAACAAAGAAACACTGATGGGATCTTTGTGGAAACTTAATGTTGTCGACATTG 843
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 928 TTCAGACCAACAAAGAAACATTGATGGGATCTTTGTGGAAACTTAATGTTGTCGACATTG 987
Query 844 AAGTGACTTTGTTACATGTGTGTCAGATGATCTTGCGCGAAAACAACTTGAGAAAGGATG 903
|||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||||| |
Sbjct 988 AAGTGACTCTGTTACATGTGTGTCAGATGGTCTTTCGCGAAAACAATTTGAGAAAGGAGG 1047
Query 904 AGCTCAAATCTAGAGCAATGGCTCTCAAGATTCTTGGGAAGATTTTCCAGCAAGAAAAGC 963
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1048 AGCTCAAGTCTAGAGCAATGGCTCTCAAGATTCTTGGGAAGATTTTTCAGCAAGAAAAGC 1107
Query 964 AATCGAGGAACGGTACAACATCAAGAAAAGAAGATGAAGACAGCGACGATGATGACAGTA 1023
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AATCGAAGAACGGTACAACATCAAGAAAAGAAGATGAAGACAGCGACGATGATGACAGTA 1167
Query 1024 GTAGTGATGACGATTCTTCACAACCACTTTCATACAGAACTCCTCTGCTCACTCAGGGGA 1083
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1168 GCAGCGATGACGATTCTTCACAACCACTTTCATACAGAACTCCTCTGCTTACTCAGGGGA 1227
Query 1084 TTGGTAGACTCTTCAGATGTCTCTGCAATCCAGCATTTGATGTAGACGATGATGAAATTG 1143
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1228 TTGGTAGACTTTTCAGATGTCTCTGCAATCCAGCATTCGATGTAGACGATGATGAAATTG 1287
Query 1144 TATACAAAGGCAAATGATCAATACCACACTCA 1175
||||||||||||||||||||||||||||||||
Sbjct 1288 TATACAAAGGCAAATGATCAATACCACACTCA 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5