BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927108
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77090.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II... 1031 0.0
> AT1G77090.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem
II reaction center PsbP family protein | chr1:28960387-28961922
REVERSE LENGTH=1019
Length=1019
Score = 1031 bits (558), Expect = 0.0
Identities = 636/674 (94%), Gaps = 3/674 (0%)
Strand=Plus/Plus
Query 122 AGACGAGAGGTGCGCTACGGCTTTGAGTAGAAGATCGGTACTGGCGTCTGGATTCTCTTT 181
||||||| |||| |||| || ||||||||||||||||||| ||||||| || || | |
Sbjct 161 AGACGAGTGGTGTGCTAGGGTTTTGAGTAGAAGATCGGTAATGGCGTCAGGGTT-GGTCT 219
Query 182 AGTCTCGTCGACGTCTTTAATGTTTCCAGGGGAAGGATTGGCTGTCGTGAAACAGGGTCT 241
|||| ||||| ||||| |||||| ||||||||||||||||||| ||||| |||||
Sbjct 220 --CCTCGACGACGGCTTTAGCATTTCCAAGGGAAGGATTGGCTGTCGTTAAACAAGGTCT 277
Query 242 TCTTGCCGGGAGAGTTCCTGGTCTATCCGAACCTGATGATGAAGGTTGGAGAACATACCG 301
||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 278 TCTCGCTGGGAGAGTTCCTGGTCTGTCCGAACCTGATGAAGAAGGTTGGAGAACATACCG 337
Query 302 TAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGC 397
Query 362 CTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCCATCGCTGATCTTGGTGGCAC 421
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 398 CTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCGATCGCTGATCTTGGTGGCAC 457
Query 422 CGAGATTGACTTGCGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTCC 481
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CGAGATTGACTTGAGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTCC 517
Query 482 TGTTCTAAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACCACC 541
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 518 TGTTCTTAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACAACC 577
Query 542 AGCGAAGGTGATCAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTTGAAGGGAAGGT 601
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 578 AGCGAAGGTGATTAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTAGAAGGGAAGGT 637
Query 602 GTTAAGTTCCAATGTTTCAGAACACGAAGGTAGACTCTATTACCAATTTGAGCTAGAGCC 661
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 638 GTTAAGTTCCAATGTTGCAGAACACGATGGTAGACTCTATTACCAATTCGAGCTAGAGCC 697
Query 662 ACCTCATGTACTGATCACAGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCAC 721
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GCCTCATGTACTGATAACTGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCAC 757
Query 722 CGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCATT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCATT 817
Query 782 CCGCATTGTTTAGA 795
||||||||||||||
Sbjct 818 CCGCATTGTTTAGA 831
Score = 84.2 bits (45), Expect = 2e-15
Identities = 60/67 (90%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 2 TTCTCGAA-GTCGCCGGACAAACATGGAAACAGCTCTGCTCCGGTACTGCGTCAATTTTT 60
|||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 28 TTCTCGAACTTCGCCGGAGAATGATGGAAACAGCTCTGCTCCGGTACTGCGTCAACTTTT 87
Query 61 CCAGTCA 67
|| ||||
Sbjct 88 CCGGTCA 94
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5