BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927110
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77110.1 | Symbols: PIN6 | Auxin efflux carrier family prote... 1443 0.0
> AT1G77110.1 | Symbols: PIN6 | Auxin efflux carrier family protein
| chr1:28970802-28974603 FORWARD LENGTH=1961
Length=1961
Score = 1443 bits (781), Expect = 0.0
Identities = 867/909 (95%), Gaps = 3/909 (0%)
Strand=Plus/Plus
Query 780 GATTTAGGCGGGTTCGGGTTTACTCGACCCGGATTTGGTGCAAGTCCTAGGCGGCTCTCG 839
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 867 GATTTAGGCGGGTTCGGATTTACTCGACCCGGATTAGGTGCAAGTCCTAGAAGGCTCTCG 926
Query 840 GGTTATGCTTCCTCCGATGCTTACTCGTTGCAGCCGACGCCACGTGCCTCGAACTTTAAC 899
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 927 GGTTATGCTTCCTCCGATGCTTACTCGTTGCAGCCAACACCACGTGCCTCGAACTTTAAC 986
Query 900 GAGCTTGACGTTAACGGAAACGGTACGCCGGTTTGGATGAAATCTCCTGCCGCCGGGAGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 GAGCTTGACGTTAACGGAAACGGTACGCCGGTTTGGATGAAATCTCCTGCCGCCGGGAGA 1046
Query 960 ATATTCCGGCAATCTTCGCCGAAGATGATGTGGGAGTCTGGGCAAAGACATGCAGCCAAG 1019
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ATATACCGGCAATCTTCGCCGAAGATGATGTGGGAGTCTGGGCAAAGACATGCAGCCAAA 1106
Query 1020 GATATCAAT-G-T-ACTGCCAGAGAAGGAGATTAGCTTCCGAGACGCACTTAAAGCTGTA 1076
||||||||| | | | ||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1107 GATATCAATGGATCAGTGCCAGAGAAGGAGATTAGCTTCAGAGACGCACTTAAGGCTGCA 1166
Query 1077 CCACAGACTACGGCAGCCGGTGGTGCTGCTTCCATGGAGGAAGGAGCTGCCGGAAAAGAC 1136
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1167 CCACAGGCTACGGCAGCCGGTGGTGGTGCTTCCATGGAGGAAGGAGCCGCCGGAAAAGAC 1226
Query 1137 ACAACTCCGGTGGCTGCTATTGGCAAGCAAGAAATGCCAAGTGCCACTGTAATGGTGCGG 1196
||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||
Sbjct 1227 ACAACTCCGGTGGCTGCGATTGGCAAGCAAGAAATGCCAAGTGCAATTGTAATGATGCGC 1286
Query 1197 CTCATACTAACAGTTGTGGGACGCAAGCTTTCTCGAAATCCTAACACTTATTCCAGCCTC 1256
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1287 CTCATACTAACAGTCGTGGGCCGCAAGCTTTCTCGAAACCCTAACACTTATTCCAGCCTC 1346
Query 1257 TTAGGTCTTGTCTGGTCACTTATATCTTTCAAATGGAATATAGCGATGCCAAACATAGTG 1316
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 1347 TTAGGTCTTGTCTGGTCACTTATATCCTTCAAATGGAATATACCGATGCCAAATATAGTG 1406
Query 1317 GATTTCTCGATAAAGATCATTTCAGATGCAGGTCTTGGGATGGCTATGTTTAGTTTAGGC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GATTTCTCGATAAAGATCATTTCAGATGCAGGTCTTGGGATGGCTATGTTTAGTTTAGGC 1466
Query 1377 CTGTTTATGGCGCTGCAGCCAAAGATGATCCCTTGTGGGGCGAAAAAGGCAACAATGGGG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 CTGTTTATGGCGCTGCAGCCAAAGATGATCCCTTGTGGGGCGAAAAAGGCAACAATGGGG 1526
Query 1437 ATGTTGATTAGGTTCATCTCAGGTCCCCTTTTCATGGCTGCTGCTTCTCTTCTTGTCGGA 1496
|||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct 1527 ATGTTGATCAGGTTCATCTCAGGTCCTCTTTTCATGGCTGGTGCTTCCCTTCTTGTCGGA 1586
Query 1497 TTGAGAGGTTCTAGGCTACATGCTGCCATCGTACAGGCGGCTCTACCGCAAGGGATAGTA 1556
|| |||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1587 TTAAGAGGTTCTAGGTTACATGCTGCTATCGTACAGGCTGCTCTACCGCAAGGGATAGTA 1646
Query 1557 CCGTTTGTGTTTGCAAGGGAGTACAATTTGCATCCAGACTTACTCAGTACATTGGTTATC 1616
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1647 CCATTTGTGTTTGCGAGGGAGTACAATTTGCATCCAGACCTACTCAGTACATTGGTTATC 1706
Query 1617 TTTGGCATGATAGTATCTTTACCAGTAACTATTCTGTACTACGTCCTCTTGGGCCTATGA 1676
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1707 TTTGGGATGATAGTATCTTTACCAGTAACTATTTTGTACTACGTCCTCTTGGGCCTATGA 1766
Query 1677 TTCACACAA 1685
|||||||||
Sbjct 1767 TTCACACAA 1775
Score = 1182 bits (640), Expect = 0.0
Identities = 735/781 (94%), Gaps = 5/781 (1%)
Strand=Plus/Plus
Query 4 AAGAAGCAAAGCAAAAGATGATAACGGGAAACGAATTCTACACGGTGATGTGTGCCATGG 63
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 AAGAGGCAAAGAAAAAGATGATAACGGGAAACGAATTCTACACGGTGATGTGTGCCATGG 96
Query 64 CACCACTCTACTTTGCCATGTTCGTGGCTTATGGATCGGTGAAGTGGTGGAAGATCTTCA 123
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 97 CACCACTCTACTTCGCCATGTTCGTGGCTTATGGATCGGTAAAGTGGTGCAAGATCTTCA 156
Query 124 CGCCGACGCAATGTTCCGGAATCAACCGTTTTGTCTCAGTTTTCGCCGTCCCTCTCCTCT 183
||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 157 CGCCGGCGCAATGTTCCGGAATCAACCGTTTTGTCTCCGTTTTCGCCGTCCCAGTCCTCT 216
Query 184 CTTTCCACTTCATCTCACAAAACAATCCTTACAAAATGGACACAATGTTCATCCTCGCCG 243
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 217 CTTTCCACTTCATCTCACAAAACAACCCTTACAAAATGGACACAATGTTCATCCTCGCCG 276
Query 244 ATACTTTATCCAAAATATTCGTCTTCGTCTTGCTCTCGCTATGGGCCCTTTTCTTCAAAT 303
| ||||| |||||||| ||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 277 ACACTTTGTCCAAAATCTTCGTCTTCGTTTTGCTCTCTCTATGGGCCGTTTTCTTCAAAG 336
Query 304 CGGGTGGTCTCGATTGGCTCATCACACTCTTCTCAATCGCTACTCTCCCTAACACTCTCG 363
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 337 CCGGTGGTCTCGATTGGCTCATCACTCTATTCTCAATCGCTACTCTCCCTAACACTCTCG 396
Query 364 TTATGGGCATACCTTTGCTTCAAGCCATGTATGGAGATTACAC-CAAAAACCTCATGGTC 422
|||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 397 TTATGGGCATACCTTTGCTTCAGGCCATGTATGGAGATTACACTCAAAC-CCTCATGGTC 455
Query 423 CAACTCGTTGTTCTTCAATGCATCATTTGGTATACTCTGCTACTCTTCCTCTTCGAACTC 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 456 CAACTCGTTGTTCTTCAATGCATCATTTGGTATACTCTGCTACTATTCCTCTTTGAACTC 515
Query 483 CGGGCAGCGAGGTTGCTCATCCGAGCCGAGTTTCCGGGTCAAGCAGCCGGGTCAATTGCC 542
|| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 516 CGAGCAGCGAGGTTGCTTATCCGAGCAGAGTTTCCGGGTCAAGCAGCCGGATCAATCGCC 575
Query 543 AAGATCCAAGTCGACGATGACGTCATTTCCTTAGACGGCGTGGATCCCCTCCGTACAGAA 602
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 576 AAGATCCAAGTCGACGATGACGTCATTTCCTTAGACGGCATGGATCCGCTCCGTACAGAA 635
Query 603 ACTGAAACCGATGCCAACGGTCGGATCAGACTTAGGATCCGACGGTCCATATCATCCGTA 662
||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 636 ACTGAAACCGATGTTAACGGTCGGATCAGGCTCAGGATCCGACGGTCCGTATCATCCGTA 695
Query 663 CCTGATTCTGTTATGTCCTCCTCCTTGTGTTTAACCCCCAGAGCCTCTAATCTTTCTAAC 722
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 696 CCTGATTCTGTTATGTCCTCCTCCTTGTGCTTAACCCCTAGAGCCTCTAATCTTTCTAAC 755
Query 723 GCCGAGATTTTCTCCGTTAACACTCCTAA---CCGTTTCTTTAACGGCGGAGGAGGAAGC 779
||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 756 GCCGAGATTTTCTCCGTCAACACTCCTAATAACCGTTTCTTCCACGGCGGAGGAGGAAGC 815
Query 780 G 780
|
Sbjct 816 G 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83834910150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5