BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927111
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77120.1 | Symbols: ADH1, ADH, ATADH, ATADH1 | alcohol dehyd... 1871 0.0
> AT1G77120.1 | Symbols: ADH1, ADH, ATADH, ATADH1 | alcohol dehydrogenase
1 | chr1:28975394-28977417 FORWARD LENGTH=1456
Length=1456
Score = 1871 bits (1013), Expect = 0.0
Identities = 1126/1182 (95%), Gaps = 2/1182 (0%)
Strand=Plus/Plus
Query 1 CAAGTTCTTCTCTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGCTGCTG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 CAAGTTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGCTGCTG 155
Query 61 TGGCATGGGAAGCCGGAAAGCCACTGGTTATGGAGGAAGTGGAGGTTGCTCCGCCGCAGA 120
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 156 TGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGGTTGCTCCACCGCAGA 215
Query 121 AACACGAAGTTCGTATCAAGATTCTCTTCACTTCTCTCTGTCACACTGATGTTTACTTCT 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 216 AACACGAAGTTCGTATCAAGATTCTCTTCACTTCTCTCTGTCACACCGATGTTTACTTCT 275
Query 181 GGGAAGCTAAGGGACAAACACCGCTGTTTCCTCGTATCTTCGGCCATGAAGCTGGAGGGA 240
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 276 GGGAAGCTAAGGGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGGA 335
Query 241 TTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCATGTGTTGCCCA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 336 TTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCATGTGTTGCCGA 395
Query 301 TCTTCACCGGAGAATGTGGAGATTGTCCTCATTGTCACTCGGAGGAATCAAACATGTGTG 360
|||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||
Sbjct 396 TCTTTACCGGAGAATGTGGGGAGTGTCGTCATTGCCACTCGGAGGAATCAAACATGTGTG 455
Query 361 ATCTTCTCAGGATCAACACCGAGCGAGGAGGGATGATTCACGATGGTGAATCGAGATTCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 456 ATCTTCTCAGGATCAACACCGAGCGAGGAGGGATGATTCACGATGGTGAATCAAGATTCT 515
Query 421 CCATCAATGGCAAACCGATTCATCATTTCCTTGGGACTTCCACGTTTAGTGAGTACACTG 480
|||| ||||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |
Sbjct 516 CCATTAATGGCAAACCAATTTACCATTTCCTTGGGACTTCCACGTTCAGTGAGTACACAG 575
Query 481 TGGTTCACTCCGGTCAGGTCGCTAAGATCAATCCGGATGCTCCTCTTGACAAAGTTTGCA 540
|||||||||| |||||||| |||||||||||||||||||||||||||||||| || || |
Sbjct 576 TGGTTCACTCTGGTCAGGTTGCTAAGATCAATCCGGATGCTCCTCTTGACAAGGTCTGTA 635
Query 541 TTGTTAGTTGTGGTTTATCCACTGGGTTAGGAGCAACTTTGAATGTGGCTAAACCCAAGA 600
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 636 TTGTCAGTTGTGGTTTGTCTACTGGGTTAGGAGCAACTTTGAATGTGGCTAAACCCAAGA 695
Query 601 AAGGTCAAAGTGTTGCCATTTTCGGACTTGGTGCTGTTGGTTTA-GCTGCTGCAGAAGGT 659
|||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||
Sbjct 696 AAGGTCAAAGTGTTGCCATTTTTGGTCTTGGTGCTGTTGGTTTAGGC-GCTGCAGAAGGT 754
Query 660 GCTAGAATCGCTGGTGCTTCTAGGATCATCGGTGTTGATCTTAACTCTCAAAGATTCGAC 719
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 755 GCTAGAATCGCTGGTGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGAC 814
Query 720 CAAGCTAAGGAATTCGGTGTGACCGAGTTTGTGAACCCGAGAGACCATGACAAACCAGTT 779
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||
Sbjct 815 CAAGCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGCCAATT 874
Query 780 CAACAGGTGATCGCTGAGATGACGAATGGAGGAGTGGACAGGAGTGTGGAGTGCACTGGA 839
|||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||
Sbjct 875 CAACAGGTGATCGCTGAGATGACGGATGGTGGGGTGGACAGGAGTGTGGAATGCACCGGA 934
Query 840 AGCGTTCAGGCCATGATTCAAGCATTTGAATGTGTTCATGATGGTTGGGGTGTTGCGGTG 899
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 935 AGCGTTCAGGCCATGATTCAAGCATTTGAATGTGTCCACGATGGCTGGGGTGTTGCAGTG 994
Query 900 CTGGTCGGTGTGCCAAGCAAAGACGATGCCTTCAAGACTCATCCGATGAATTTCTTGAAT 959
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CTGGTGGGTGTGCCAAGCAAAGACGATGCCTTCAAGACTCATCCGATGAATTTCTTGAAT 1054
Query 960 GAGAGGACTCTTAAGGGTACTTTCTTCGGGAACTACAAACCCAAAACTGACATTCCCGGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GAGAGGACTCTTAAGGGTACTTTCTTCGGGAACTACAAACCCAAAACTGACATTCCCGGG 1114
Query 1020 GTTGTAGAAAAGTACATGAACAAGGAGCTGGAGCTTGAGAAATTCATCACCCATACAGTG 1079
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1115 GTTGTGGAAAAGTACATGAACAAGGAGCTGGAGCTTGAGAAATTCATCACTCACACAGTG 1174
Query 1080 CCATTCTCGGAGATCAACAAGGCCTTTGATTACATGTTGAAGGGAGAGAGTATTCGTTGC 1139
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1175 CCATTCTCGGAAATCAACAAGGCCTTTGATTACATGCTGAAGGGAGAGAGTATTCGTTGC 1234
Query 1140 ATCATCACCATGGGTGCTTGAAGCCATTCTGTTGCCGATGAT 1181
|||||||||||||||||||||||||||||| | || ||||||
Sbjct 1235 ATCATCACCATGGGTGCTTGAAGCCATTCTCTCGCAGATGAT 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5