BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927119
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77210.1 | Symbols: STP14, AtSTP14 | sugar transporter 14 | ... 2444 0.0
> AT1G77210.1 | Symbols: STP14, AtSTP14 | sugar transporter 14
| chr1:29008939-29012096 REVERSE LENGTH=2055
Length=2055
Score = 2444 bits (1323), Expect = 0.0
Identities = 1489/1570 (95%), Gaps = 8/1570 (1%)
Strand=Plus/Plus
Query 12 TTTGAAAGCCATGGCCGGTGGAGCTCTTACTGACGAAGGAGCCCTAAAGAGAGCTCATCT 71
||| |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 434 TTTTAAAGCCATGGCCGGTGGAGCTCTTACCGATGAAGGAGGCCTAAAGAGAGCTCATCT 493
Query 72 CTATGAACATCGAATAACTTCTTACTTCATCTTCGCTTGCATCGTTGGATCCATGGGAGG 131
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 494 CTATGAACATCGGATCACTTCTTACTTCATCTTCGCTTGCATCGTCGGATCCATGGGAGG 553
Query 132 CTCTCTCTTCGGCTATGATCTGGGAGTCTCTGGTGGTGTTACTTCAATGGACGATTTCTT 191
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 554 CTCTCTTTTCGGCTATGATCTTGGAGTCTCTGGTGGTGTTACATCAATGGACGATTTCTT 613
Query 192 GAAAGAGTTCTTCCCAGGAATCTACAAAAGAAAGCAAATGCATCTGAACGAAACAGATTA 251
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 614 GAAAGAGTTCTTCCCAGGGATCTACAAAAGAAAGCAAATGCATCTAAACGAAACAGATTA 673
Query 252 CTGCAAATACGACAATCAAATCCTCACACTCTTCACTTCCTCTCTCTACTTCGCCGGTTT 311
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 674 CTGCAAATACGACAATCAAATCCTCACACTCTTCACTTCTTCTCTCTACTTCGCCGGTTT 733
Query 312 AATCTCAACTTTTGGAGCTTCCTATGTCACCAGAATCTACGGCAGGAGAGGAAGCATCCT 371
|||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 734 AATCTCAACTTTCGGAGCTTCTTACGTCACCAGAATCTACGGTAGGAGAGGAAGCATCCT 793
Query 372 TGTTGGCTCTGTTAGCTTCTTCCTCGGAGGAGTCATTAACGCCGCCGCCAAAAACATCCT 431
||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 794 CGTTGGCTCTGTCAGCTTCTTCCTCGGAGGAGTGATTAACGCTGCAGCCAAAAACATCCT 853
Query 432 CATGTTAATCCTTGGTCGAATCTTCCTCGGCATAGGCATTGGATTCGGAAACCAGGCGGC 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CATGTTAATCCTTGGTCGAATCTTCCTCGGCATAGGCATTGGATTCGGAAACCAGGCGGT 913
Query 492 TCCGTTATACCTCTCGGAGATGGCTCCAGCGAAGATTAGAGGAACCGTGAATCAGCTTTT 551
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 914 TCCGCTATACCTCTCGGAGATGGCTCCAGCGAAGATTAGAGGAACTGTGAATCAGCTTTT 973
Query 552 CCAGCTAACAACTTGCATTGGCATTCTAGTTGCTAATTTGATAAACTACAAAACAGAGCA 611
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 974 CCAGCTAACAACTTGCATTGGAATTCTAGTTGCTAATTTGATAAACTACAAAACAGAGCA 1033
Query 612 AATCCATCCATGGGGATGGAGACTCTCTCTCGGTCTCGCCACCGTCCCAGCTATACTCAT 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 AATCCATCCATGGGGATGGAGACTCTCTCTCGGTCTCGCCACCGTCCCAGCTATACTCAT 1093
Query 672 GTTCCTTGGTGGACTCGTTTTGCCCGAAACACCCAACAGTCTTGTCGAGCAAGGGAAGCT 731
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1094 GTTCCTCGGTGGACTCGTTTTGCCTGAAACACCCAATAGTCTTGTCGAGCAAGGGAAGCT 1153
Query 732 CGAAGA-GGCTAAAGCCGTACTGATCAAAGTACGTGGCACAAACAATATAGAAGCTGAGT 790
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CGA-GAAGGCTAAAGCCGTGCTGATCAAAGTACGTGGCACAAACAATATAGAAGCTGAGT 1212
Query 791 TTCAGGATCTTGTCGAAGCCAGTGAAGCTGCTAGAGCCGTAAAGAATCCGTTTCGCAATC 850
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1213 TTCAGGATCTTGTCGAAGCCAGTGACGCTGCTAGAGCCGTGAAGAATCCGTTTCGCAATC 1272
Query 851 TTCTTGCTCGGAGGAACAGACCACAGCTAGTGATTGGAGCGATTGGGATTCCTGCGTTTC 910
|||||||| | || |||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct 1273 TTCTTGCTAGAAGAAACAGACCGCAGCTAGTGATTGGAGCCATTGGGCTTCCTGCGTTTC 1332
Query 911 AGCAACTAACCGGAATGAATTCGATTTTGTTTTATGCTCCGGTTATGTTTCAGAGCTTAG 970
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1333 AGCAACTAACCGGAATGAATTCGATCCTGTTTTATGCTCCGGTTATGTTTCAGAGCTTAG 1392
Query 971 GGTTTGGTGGATCCGCATCACTTATCTCGTCCACGATTACAAACGCTGCACTCGTTGTCG 1030
||||||||||||| || || ||||||||||| || |||||||| ||||| || |||||||
Sbjct 1393 GGTTTGGTGGATCTGCGTCGCTTATCTCGTCTACCATTACAAATGCTGCGCTTGTTGTCG 1452
Query 1031 CGGCGATCATGTCTATGTATTCTGCTGATAAATTTGGAAGAAGGTTTCTTCTTCTTGAAG 1090
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1453 CGGCGATCATGTCTATGTATTCAGCTGATAAATTTGGAAGAAGGTTTCTTCTTCTTGAAG 1512
Query 1091 CTAGCGTGGAGATGTTCTGTTACATGGTTGTAGTAGGAGTAACACTAGCCTTGAAGTTTG 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 CTAGCGTGGAGATGTTCTGTTACATGGTTGTAGTAGGAGTAACACTAGCCTTGAAGTTTG 1572
Query 1151 GGGAAGGCAAAGAGCTACCAAAATCGCTCGGTGTGATTCTTGTGGTCCTTATCTGTCTAT 1210
||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1573 GGGAAGGTAAGGAGCTACCAAAATCGCTCGGTCTGATTCTTGTGGTCCTTATCTGTCTAT 1632
Query 1211 TTGTATTGGCGTATGGTCGGTCATGGGGTCCAATGGGATGGTTAGTTCCGAGCGAGCTTT 1270
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1633 TTGTATTGGCGTATGGTCGATCTTGGGGTCCAATGGGATGGTTAGTTCCGAGCGAGCTTT 1692
Query 1271 TCCCTTTAGAGACTCGATCAGCCGGTCAGAGTGTTGTGGTGTGCGTAAACCTTTTCTTCA 1330
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1693 TCCCTCTAGAGACTCGATCAGCCGGTCAGAGCGTTGTGGTGTGCGTGAACCTTTTCTTCA 1752
Query 1331 CGGCTCTAATCGCGCAGTGCTTCCCCGTGTCGCTGTGCCATCTCAAGTATGGAATATTCC 1390
||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 1753 CGGCTCTAATCGCGCAGTGTTTCCTGGTGTCGCTGTGCCATCTCAAGTACGGAATATTCC 1812
Query 1391 TTTTATTCGCTGGACTTATATTCGGGATGGGAAGTTTCGTTTACTTTCTGTTGCCGGAGA 1450
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1813 TTTTATTCGCCGGACTTATATTGGGGATGGGAAGCTTCGTTTACTTTCTGTTGCCGGAGA 1872
Query 1451 CGAAACAGGTTCCTATTGAAGAGGTTTACCTTCTTTGGAGACAGCATTGGCTATGGAAGA 1510
||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1873 CGAAACAGGTTCCGATTGAAGAGGTTTATCTTCTTTGGAGACAGCATTGGTTATGGAAGA 1932
Query 1511 AATATGTAGAGGATGGTGATGAA-AATGGTCAATCGGTAAATGAGTAAAAACAtttt-tt 1568
||||||| || |||| ||||||| || | ||||||| ||||||| |||| |||||| ||
Sbjct 1933 AATATGTCGAAGATGTTGATGAATAA-GATCAATCGATAAATGAATAAA--CATTTTCTT 1989
Query 1569 -tttGTCAAA 1577
|||||||||
Sbjct 1990 GTTTGTCAAA 1999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77861045295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5