BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927125
Length=2512
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77270.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1195 0.0
> AT1G77270.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G07730.1);
Has 428 Blast hits to 388 proteins in 92 species: Archae -
0; Bacteria - 31; Metazoa - 189; Fungi - 10; Plants - 97; Viruses
- 0; Other Eukaryotes - 101 (source: NCBI BLink). | chr1:29027778-29031285
FORWARD LENGTH=2520
Length=2520
Score = 1195 bits (647), Expect = 0.0
Identities = 832/917 (91%), Gaps = 30/917 (3%)
Strand=Plus/Plus
Query 1610 AAAGCATACGAGAAATGATGAGTCTCAGACAATTTTCAGAGCTTCAAAGAGACTGAAGAC 1669
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 AAAGAATACGAGAAATGATGAGTCTCAGACAATTTTCAGAGCTTCAAAGAGACTGAAGAC 1507
Query 1670 TGAGATTGGGAGAGCAGAAAATAACTCGATTTCAAAGACTATCCCAGTGTTGGTTAACAC 1729
|||||||||||||||||| ||||||||||||||||||||| |||| | ||||||| ||
Sbjct 1508 TGAGATTGGGAGAGCAGATCATAACTCGATTTCAAAGACTAACCCA--G-TGGTTAAAAC 1564
Query 1730 CAAAGATATCCAACGAAAGGAA-CGAGAGGCTTTGCGGGGTAGGAAGATTCC-TGTGACC 1787
||||||||| |||||||| ||| ||||||||||||||||| ||||||| ||| |||||||
Sbjct 1565 CAAAGATATTCAACGAAA-GAACCGAGAGGCTTTGCGGGGAAGGAAGA-TCCATGTGACC 1622
Query 1788 AAGCACAATAATGAATCGAAATCTAGAGGTAATGTCAAAGA-AAGCTTATTTCACAGTTG 1846
|||||||||||||||||||||||||||||| |||||| ||| || ||||||||||||||
Sbjct 1623 AAGCACAATAATGAATCGAAATCTAGAGGTCATGTCATAGACAA-CTTATTTCACAGTTT 1681
Query 1847 CAAACATGCCAAGCAGGAGAA-AAAAGAGAGCCTATCGTCAATGGATAAAACCTATTCAT 1905
||||| | ||||| ||||||| ||| |||| |||||||| |||| |||| ||||||||
Sbjct 1682 CAAACCTTCCAAGAAGGAGAATGAAA-TGAGCTTATCGTCAGTGGAAAAAAGCTATTCAT 1740
Query 1906 ATTACGTAGC---T-T-----A-T-C-TAAGAAATTCCATTACCATCTTCAAATC-GGAT 1952
||||| ||| | | | | | ||||||||||| ||||||||||||| || |||
Sbjct 1741 ATTACACAGCTTTTCTAAGAAACTCCATAAGAAATTCCGTTACCATCTTCAATTCGGGA- 1799
Query 1953 CGACAGGTGAAACCTATGAAAGGTGAAGTGTGTTTGTCCGATCCTGATATTATTGCAATC 2012
| ||| |||||||||||||||| || |||||||||||| |||||||||||||||||| ||
Sbjct 1800 CAACAAGTGAAACCTATGAAAGATGCAGTGTGTTTGTCTGATCCTGATATTATTGCAGTC 1859
Query 2013 AGTGATCACCCCTTTCCGGATGGAGGCAAATCGCCATTCGAGGCAACTAATGACGGCAAA 2072
||| |||||||||||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 1860 AGTAATCACCCCTTTCCGGATGGAGGCAAATCCCCATTTGAGGCAACAAAAGACGGCAAA 1919
Query 2073 GTGATAGATCTTGAAGATGGTATTAAACCTGATGATATATTCAACTCTTGGTTTAGCAAG 2132
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1920 GTGATAGATCTGGAAGATGGTATTAAACCTGATGATATATTCAACTCTTCGTTTAGCAAG 1979
Query 2133 AAGCTAATGGAAATTCTCAGAAATCCCTATGATGAAAAGGAGTTCTTGAGACTCTATAAT 2192
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1980 AAGCTAATGGAAATTCTCAGAAATCCCTACGATGAAAAGGAATTCTTGAGACTCTATAAT 2039
Query 2193 GAGGCATCACTCAAGAGACCGTTGACTAAGTCTAGGCAATTACGAGATGGAAGAGAGATT 2252
|| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2040 GAAGCATCAGTCAAGAGACCGTTGACTAAGTCCAGGCAATTACGAGATGGAAGAGAGATT 2099
Query 2253 GAATA-TAATGATCAAC-ACAAGTTGGCACTTTCATATCTCGAAAAGTATACAGATTTCA 2310
||||| || || | || || |||| || |||||||||||||||||||||||||||||||
Sbjct 2100 GAATATTATTG-T-GACGACCAGTTTGCCCTTTCATATCTCGAAAAGTATACAGATTTCA 2157
Query 2311 ACAAGAAGTATCATCGTTATCGGAAGGATCTTCCTAGAGCTTTGAACCTGTTGCGCGGGT 2370
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2158 ACAAGACGTATCATCGTTACCGGAAGGATCTTCCTAGAGCTTTGAACCTGTTGCGCGGAT 2217
Query 2371 TTTTCTTTTATTTAGAGAACATAGTTCTTGAAGGTGCATTCAAACCCTGGCTGCATGAAA 2430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 TTTTCTTTTATTTAGAGAACATAGTTCTTGAAGGTGCATTCAAACCCTGGCTGCATGAAA 2277
Query 2431 AACGTTTGACAAA-TCTGTGTGTTGATGCTAGAGGGTGCAAAGATATGGTAGGCAACAAG 2489
||||||||||||| | ||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 2278 AACGTTTGACAAAATTTGTGTGTTGATACTAGAGGGTGCATAGATATTGTAGGCAACAAG 2337
Query 2490 TAAAGCGGCACCGCACT 2506
||| ||||||| |||||
Sbjct 2338 TAACGCGGCACTGCACT 2354
Score = 915 bits (495), Expect = 0.0
Identities = 936/1130 (83%), Gaps = 106/1130 (9%)
Strand=Plus/Plus
Query 459 GTGAAGAAGGAAATAAAGACCGAGTCAAACATAGATGAAGTTTGTGGTAGAATGCTGCCT 518
||||||| |||||||||||| |||||||||||||||||||||||||||| |||| || |
Sbjct 399 GTGAAGATGGAAATAAAGACTGAGTCAAACATAGATGAAGTTTGTGGTAAAATGATGGAT 458
Query 519 C-TTG-G-TG-AAGTGAATGCATCAGGGGATGGTTCTTTAGCT------AA---GAAG-- 563
| ||| | || ||| ||| || ||| ||||| | |||||||| || ||||
Sbjct 459 CTTTGTGTTGAAAG-GAACGCGTCAAAGGATGATGCTTTAGCTAAGAAGAACCCGAAGAA 517
Query 564 -TCTG-TGGTGGCTAAGACCATTGTGAAGAAGGAAATCATTGCGATTGAGTCAGACACAG 621
|||| | ||||||||||||||| |||| ||||||||||||| ||||||||| || ||||
Sbjct 518 ATCTGCT-GTGGCTAAGACCATTTTGAATAAGGAAATCATTGAGATTGAGTCTGATACAG 576
Query 622 ACACAGATGAAGTTGCTGGTAGAATGCCGGCTCTTTTTCGTGCCGAGAATGCATCAGGGG 681
||||||||||||||| | ||||| | | |||||| | || ||||||||||||||||
Sbjct 577 ACACAGATGAAGTTGGTCCTAGAAAGTTGCCTCTTTGTAATGAAGAGAATGCATCAGGGG 636
Query 682 ATGATGTTTTAGCTAAGAACTCGAACATGT-CTGCTGTGGCTGAGACAATTGTGAAGAAG 740
|||||||||||||||||||| |||| | || || |||||||| |||| |||||||||||
Sbjct 637 ATGATGTTTTAGCTAAGAACCCGAAGAAGTGCT-CTGTGGCTAAGACGATTGTGAAGAAA 695
Query 741 GAAATAGTTGAGATTGAGTCTGCCACAGACACAGATGAAGTTGGTGGTAGAATGCTGGCT 800
|||||| |||||||| | || | ||| ||||||| |||||||||| || | |
Sbjct 696 GAAATA---AAGATTGAG--T--CA-A-ACATAGATGAACTTGGTGGTAG-AT--T-G-- 740
Query 801 CTTTGTGGTGAAGTGAATGCATCAGGGGATGATGTTTTAGCTAAG-AACTCGAAGAATTC 859
| || |||||||||||||| |||||||||||||||||| ||| ||||||| ||
Sbjct 741 C-------TG--GTGAATGCATCAGGTGATGATGTTTTAGCTAAGAAAC-CGAAGAAGTC 790
Query 860 TGCGGTGGCTAAGTCAATTGTGAAGAAGGAAATAATTGAGATTGAGTCAGCcacagacac 919
|| |||||||||| | |||||| | ||||||||||||||||||||| ||| |
Sbjct 791 TGTGGTGGCTAAGACCATTGTGTGGCAGGAAATAATTGAGATTGAGT------CAG---C 841
Query 920 agacacagacacagacacagaTGAAGTTGATGGTAGAATGCTGGCTCTTTGTGGTAAAGT 979
|||||||||||||||||||||||||| ||||| || | || ||||||||||||||||
Sbjct 842 ---CACAGACACAGACACAGATGAAGTTGGTGGTAAAACGTTGTCTCTTTGTGGTAAAGT 898
Query 980 GAATGCATCAGGGGACGATCTTTTAGCTAAAGATGG------C-AAA-AA-CAACATGCA 1030
| ||||||| ||||| ||||||||||||| |||||| | ||| || |||| ||||
Sbjct 899 GGATGCATCCGGGGATGATCTTTTAGCTAGAGATGGCAAAACCAAAAGAACCAACCTGCA 958
Query 1031 -ACTTGTTTGTGTTGATGATTGCGATTCTGGTTTGGTTCATGATTTGGAATATAAAAAGT 1089
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 GA-TTGTTTGTGTTGATGATTGCGATTCCGGTTTGGTTCATGATTTGGAATATAAAAAGT 1017
Query 1090 ACTTGGCACATTTTAGTGAAATCG-GGAATCTATATTTGCTTGAGGACAATGTAAGGGGT 1148
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1018 ACTTGGCACATTTTAGTGAAA-CGCGGAATGTATATTTGCTTGAGGACAATGTAAGGGGT 1076
Query 1149 AGTTCGCCTGTGCGCATTATGTACAATGTCTCCTACGATTATGAAGAATCTGATAGGAG- 1207
||||| || ||||| || | |||| | || |||||| | |||| |||||
Sbjct 1077 AGTTCTCCAGTGCG---TA--T--AATG-----T---ATCATGAAGCACCTGACAGGAGT 1121
Query 1208 TAAAGGAAAAGCAGTAAAAACTGAGAAGAGTAGAGCAGGGAGAAAGGCAAAGTCTCCTAC 1267
| || ||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 1122 TTAA-GAAAAGCAGTAGAAACCGAGAAGAGTAAAGCAGGGAGAAAGCCAAAGTCTCCTAC 1180
Query 1268 GATTTCCAGTGTATCCAAGAGGTTGAAGACTGAGAATGGTAGAGTAGATCATAAGTCGAT 1327
|||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1181 CATTTCCAGTGTATCTAAGAGGTTGAAGACTGAGGATGGTAGAGCAGATCATAAGTCGAT 1240
Query 1328 TTCGAGGACTGTCTTAAGGACCAAAGAAACCCAGCAAAAGAAAGGAGATGCTCGACGTGG 1387
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1241 TTCGAGGACTGTCTTAAGGACCAAAGAAACCCAGCAAAAGAAAGGAGATGAT-GT--TCG 1297
Query 1388 AAGAAAGAGTTCTGTGGCCAAG-ACCTCTATCGAATTAAAGCCTAGAAGTTATGTCATAG 1446
| | |||| ||| | |||||||||| ||||||||||||||||||||| ||
Sbjct 1298 A----------C-GTGG--AAGGAGCTCTATCGAAGTAAAGCCTAGAAGTTATGTCAGAG 1344
Query 1447 ACACAAAACAACAGAATGGAGATGCTCGACGTGGAAGGAAGATTTCTGTGGCCAAGAACA 1506
|||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 ACACCAAAGAACGGAACGGAGATGCTCGACGTGGAAGGAAGATTTCTGTGGCCAAGAACA 1404
Query 1507 CTATCAAATTAAAGCCTGCAAGTTATGTCAGAGACTCCCAAGAAAAGAAT 1556
||||| ||| ||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1405 CTATCGAATCAAAGCCTACAAGATATGTCAGAGACTCTCAAGAAAAGAAT 1454
Score = 595 bits (322), Expect = 6e-169
Identities = 600/725 (83%), Gaps = 55/725 (8%)
Strand=Plus/Plus
Query 1 ATAGCCTGCTTAAGTTGAATATGACGAGGAAGTCGAAGAAGAAGTTTTCCTGGGC-TAAG 59
||||||||| |||||||||||||| ||||||| | |||||||| | ||| ||| ||||
Sbjct 236 ATAGCCTGC-TAAGTTGAATATGAAGAGGAAG-C--CGAAGAAGTCTGCCT-GGCTTAAG 290
Query 60 ACAATT-CTGACCAAGGAAATAATTGAGATCGAGTCTGATACAGACGACACA-GATGATG 117
|| ||| | || |||||||| |||||||| ||||||||||||||| || | ||||| |
Sbjct 291 ACTATTGC-GAAGAAGGAAATTATTGAGATTGAGTCTGATACAGAC-ACTGATGATGAAG 348
Query 118 TTGGTGCTAGAAGAAAGTTGGAT-TTTTGTGGTGAAGAGAATGCTAAGTCTTCGGTGAAC 176
||| |||| | |||||||| | ||| ||||||||||||||| ||||||||||||||
Sbjct 349 TTGCTGCT---ACAAAGTTGGCTCCTTT-TGGTGAAGAGAATGCGAAGTCTTCGGTGAAG 404
Query 177 AAGGAAATCAAGACTGAGTCAAACATAGATGAAGTTTGTGGTAGAATGCTGGATCTTTGC 236
| |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 405 ATGGAAATAAAGACTGAGTCAAACATAGATGAAGTTTGTGGTAAAATGATGGATCTTTGT 464
Query 237 GTTGAAAGGAACGC-TCTAAGGGATGATGCTTTAGCTAAGAAC--CCC-AAGAAATCTGC 292
|||||||||||||| || |||| ||||||||||||||||||| ||| |||||||||||
Sbjct 465 GTTGAAAGGAACGCGTCAAAGG-ATGATGCTTTAGCTAAGAAGAACCCGAAGAAATCTGC 523
Query 293 TGTGGCTAAGAAGACCATTGTGGACAAGGAAATTATTGAGATTGATTCTGACACGGACAC 352
||||||||||| ||||| || | |||||||| ||||||||||| ||||| || |||||
Sbjct 524 TGTGGCTAAGA---CCATTTTGAATAAGGAAATCATTGAGATTGAGTCTGATACAGACAC 580
Query 353 TGATGAAGTTGGTGCTACAAAGTTGCCTTTTTGTAATGAAGAGAATGCATCAGGGGATAA 412
|||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 581 AGATGAAGTTGGTCCTAGAAAGTTGCCTCTTTGTAATGAAGAGAATGCATCAGGGGATGA 640
Query 413 TACTTTAGCTAAGAACCCGAACAAGT-CTGTGGTGGCTAAGACCACTGTGAAGAAGGAAA 471
| |||||||||||||||||| |||| || || |||||||||| | ||||||||| ||||
Sbjct 641 TGTTTTAGCTAAGAACCCGAAGAAGTGCTCTG-TGGCTAAGACGATTGTGAAGAAAGAAA 699
Query 472 TAAAGACCGAGTCAAACATAGATGAAGTTTGTGGTAGAATGCTGCCTCTTGGTGAAGTGA 531
|||||| |||||||||||||||||| || |||||||| | ||| | |||||| ||
Sbjct 700 TAAAGATTGAGTCAAACATAGATGAACTTGGTGGTAGA-T--TGC-T---GGTGAA-TG- 750
Query 532 ATGCATCAGGGGATGGT-TCTTTAGCTAAGAA---G------TCTGTGGTGGCTAAGACC 581
||||||| |||| | | |||||||||||| | ||||||||||||||||||
Sbjct 751 ---CATCAGGTGATGATGT-TTTAGCTAAGAAACCGAAGAAGTCTGTGGTGGCTAAGACC 806
Query 582 ATTGTGAAGAAGGAAATCATTGCGATTGAGTCAG--ACA--CA--GACACAGATGAAGTT 635
|||||| | ||||||| |||| ||||||||||| ||| || |||||||||||||||
Sbjct 807 ATTGTGTGGCAGGAAATAATTGAGATTGAGTCAGCCACAGACACAGACACAGATGAAGTT 866
Query 636 GCTGGTAGAATGCCGGCTCTTTTTCGTGCCGAGAATGCATCAGGGGATGATGTTTTAGCT 695
| ||||| || | | |||||| | || | | ||||||| ||||||||| ||||||||
Sbjct 867 GGTGGTAAAACGTTGTCTCTTTGTGGTAAAGTGGATGCATCCGGGGATGATCTTTTAGCT 926
Query 696 A-AGA 699
| |||
Sbjct 927 AGAGA 931
Score = 237 bits (128), Expect = 4e-61
Identities = 242/295 (82%), Gaps = 16/295 (5%)
Strand=Plus/Plus
Query 622 ACACAGATGAAG-TTGCTGGTAGAATGCCGGCTCTTTTTCG-TGCCGA-GAATGCATCAG 678
||| |||||||| ||| ||||| |||| || ||||| | | || | ||| || |||
Sbjct 427 ACATAGATGAAGTTTG-TGGTAAAATGATGGATCTTTGT-GTTG-AAAGGAACGCGTCAA 483
Query 679 GGGATGATGTTTTAGCT---AAGAACTCGAACATGTCTGCTGTGGCTGAGACAATTGTGA 735
|||||||| ||||||| |||||| |||| | |||||||||||| |||| ||| |||
Sbjct 484 AGGATGATGCTTTAGCTAAGAAGAACCCGAAGAAATCTGCTGTGGCTAAGACCATTTTGA 543
Query 736 AGAAGGAAAT-AGTTGAGATTGAGTCTGCCACAGACACAGATGAAGTTGGTGGTAGAATG 794
| |||||||| | ||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 544 ATAAGGAAATCA-TTGAGATTGAGTCTGATACAGACACAGATGAAGTTGGTCCTAGAAAG 602
Query 795 CTGGCTCTTTGTGGTGAAGTGAATGCATCAGGGGATGATGTTTTAGCTAAGAACTCGAAG 854
|| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 603 TTGCCTCTTTGTAATGAAGAGAATGCATCAGGGGATGATGTTTTAGCTAAGAACCCGAAG 662
Query 855 AATT-CTGCGGTGGCTAAGTCAATTGTGAAGAAGGAAATAATTGAGATTGAGTCA 908
|| | || | ||||||||| | ||||||||||| ||||||| |||||||||||
Sbjct 663 AAGTGCT-CTGTGGCTAAGACGATTGTGAAGAAAGAAATAA---AGATTGAGTCA 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124664853355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5