BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927129

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59840.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   259    8e-69


> AT3G59840.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED 
IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; 
Has 72 Blast hits to 72 proteins in 12 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22105522-22106198 
REVERSE LENGTH=677
Length=677

 Score =  259 bits (140),  Expect = 8e-69
 Identities = 161/171 (94%), Gaps = 1/171 (1%)
 Strand=Plus/Plus

Query  95   GTTTCCGACGATCTCGAACCTTGTCGCTGGGAGATTCTTCCCGCCGACGGCAAAGACGCT  154
            |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  263  GTTTCCGATGATCTCGAACCTTGCCGTTGGGAGATTCTTCCCGCCGACGGCAAAGACGCT  322

Query  155  CCACAGTTTCGCGTCGTCTTCTGAAGAATCAATTGATAAATCTCTAGAAGATGTAAAATT  214
            |||||||||||||||||||||||| |||||| |  || ||||| ||||||||||||| ||
Sbjct  323  CCACAGTTTCGCGTCGTCTTCTGAGGAATCAGTCAAT-AATCTGTAGAAGATGTAAACTT  381

Query  215  GTTCAATCTCGTCGTTGATAATTGTATTTGGTCTGGTAATGTCATCTCTTT  265
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  382  GTTCAATCTCGTCGTTGATAATTGTATTTGGTCTGGTAATGTCATCTCTTT  432


 Score =  126 bits (68),  Expect = 9e-29
 Identities = 78/83 (94%), Gaps = 0/83 (0%)
 Strand=Plus/Plus

Query  1    TCATAAACTCCAGCTCCGGGGATGAACGGAGCCATAGAAGTTCCTCGGCCCGATCGCGCG  60
            ||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  137  TCAGAAACTCCAGCCCCGGGGATGAATGGAGCCATAGAAGTTCCTCGGCCCGATCGCGCG  196

Query  61   ACGGTTTTCGAGTTCAGCTTCGT  83
            ||||||||||||||| ||| |||
Sbjct  197  ACGGTTTTCGAGTTCGGCTCCGT  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12114527509


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5