BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927133
Length=2955
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77320.1 | Symbols: MEI1 | transcription coactivators | chr1... 4525 0.0
> AT1G77320.1 | Symbols: MEI1 | transcription coactivators | chr1:29056532-29062966
FORWARD LENGTH=3383
Length=3383
Score = 4525 bits (2450), Expect = 0.0
Identities = 2803/2972 (94%), Gaps = 30/2972 (1%)
Strand=Plus/Plus
Query 2 GTTAGGTTTTCCGGCGGCGATGAAGACGACGCAACTGTTCAAAGGGGCAAATGTGTTTAT 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 190 GTTAGGTTTTCCGGCGGCGATGAAGACGACGCAACTGTTCAAAGGGGCAAATGTTTTTAT 249
Query 62 GTCTCGGAATCTGGTACCTCCTGAAGTTTTCGACACACTTCTCGATGCTTTCAAGCTTAA 121
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 250 GTCTCGGAATCTGGTGCCTCCTGAAGTCTTCGACACACTTCTCGATGCTTTCAAGCTTAA 309
Query 122 CGGTGCCGAAATCTTCCTCTGCTGCGACCCCTCTCGGAACGGTCCCTCCGATTTCCATGT 181
|||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 310 CGGTGCCGAAATCTTCCTCTGCTGCGACCCATCTCGGAGTGGTCCCTCTGATTTCCATGT 369
Query 182 CATCGCATCTCCCGATCATGAGAAATTTAAGGATCTTAATGCCAAGGGTTGTAACTTAAT 241
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 370 CATCGCTTCTCCCGATCATGAGAAATTTAAGGATCTTAAAGCCAAGGGTTGTAACTTAAT 429
Query 242 TGGTCCGCAATGTGCGCTCTCCTGTGCAAAAGAGGGTAGACCACTGCCACAAGGGGGATT 301
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 430 AGGTCCGCAATGTGCGCTCTTCTGTGCAAAAGAGGGTAGACCACTGCCACAAAGGGGATT 489
Query 302 CACTTGTTGCCTAGCTATGGATGGTCTGAAAGTTCTTGCTTCTGGTTTTCTGATAGATGA 361
||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 490 CACTTGTTGCCTAGCCATGGATGGTCTAAAAGTTCTTGCTTCTGGTTTTCTGGTAGATGA 549
Query 362 GAAGGCCAAGATCAAGGAGTTGGTTACTTCCATGGGGGGCGTTTTACTTTCCAAAGCTTC 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 550 GAAGGTCAAGATCAAGGAGTTGGTTACTTCCATGGGGGGCGTTTTACTTTCCAGAGCTTC 609
Query 422 TTCTGATGTCAACTTCGTCATTGTGAAAAATGTCTCGGCTGCCAAGTACAAGTGGGCTCT 481
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 610 TTCTGATGTGAACTTCGTCATTGTGAAAAATGTCTTGGCTGCCAAGTACAAGTGGGCCCT 669
Query 482 GAATAAGAAGCCAATCGTTACACTGAATTGGTTACATCGGTGTTGGAATGAGCACCGTGT 541
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 670 GAATAAGAAGCCAATCGTTACTCTGAATTGGTTACATCGGTGTTGGAATGAGCACCGTGT 729
Query 542 GGTTCCCCAGGAACCATATAAGATTCCTCCTTTTTCTGGATTGACAATCTGTGTCACAAG 601
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GGTTCCTCAGGAACCATATAAGATTCCTCCTTTTTCTGGATTGACAATCTGTGTCACAAG 789
Query 602 AATTCCAGCAGATGAGCGCAAGGGAATGGAGAAGGTAATTTCAGAATATGGAGGGAGCTA 661
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 790 AATTCCAGCAGATGAACGCAAGGGAATGGAAAAGGTAATTTCAGAATATGGAGGGAGCTA 849
Query 662 CTCTGCTGAGCTAACAAAGAGTTGTACACATTTGAT--C---T--TG-T----GTGACAA 709
|||||||||||||||||||||||||||||||||||| | | || | |||||||
Sbjct 850 CTCTGCTGAGCTAACAAAGAGTTGTACACATTTGATCGCTGATGCTGCTGAAGGTGACAA 909
Query 710 ATACAAAGTTGCTCGAAAATGGGGTCACATTCAAATTGTCACACGGAAATGGTTTCAGCA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATACAAAGTTGCTCGAAAATGGGGTCACATTCAAATTGTCACACGGAAATGGTTTCAGCA 969
Query 770 GTCCATCGATAGAAAA-GTGTGTCTCAATGAAGAGTTATATCCTGTTCTCAGTTCCATAC 828
||||||||||| |||| || |||||||||||||||| ||||||||||||| |||||||||
Sbjct 970 GTCCATCGATA-AAAAGGTTTGTCTCAATGAAGAGTCATATCCTGTTCTCGGTTCCATAC 1028
Query 829 CCTTGACAAGAGGGGTGCAAGATTTGGGGGTCCATAATGGTCAAGAAAAGTTTCCTTCGG 888
||||||||||||| |||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct 1029 CCTTGACAAGAGGAGTGCGAGATTTGGGGGTTCATAATGGTCTAGAAAAGTTTCCTTCGG 1088
Query 889 TTGCAACTGCGTCTGCGGCAGATTCATATGCTTCTTGTGCTCAGTCTAGAGACTCAGATA 948
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1089 CTGCAACTGCGTCCGCGGCAGATTCATATGTTTCTTGTGCTCAGTCTAGAGACTCAGATA 1148
Query 949 TAGAAGCTTCTGGTTCACAAAATGTTTTTTCCACTTCTATGAATCCCAGTACCGATGTTA 1008
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1149 TAGAAGCTTCTGCTTCACAAAATGTTTTTCCCACTTCTATGAATCCCAGTACCGATGTTA 1208
Query 1009 AAGAACCAAGTGGAGGCCCAACTACAAGGCCGCAAGAGCAAAATATTGATGGTTGTATTG 1068
|||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 1209 AAGAACCAGGTGGAGGCCCAACGGCAAGGCCGCAAGAGCAAAACATTGATGGTTGTACTG 1268
Query 1069 CTAGGGATTCAGAATCCGAAGACAATGACTTGTACTTATCAGATTGTAGAATTTTCCTGC 1128
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1269 CCAGGGATTCAGAATCCGAAGACAATGACTTGTACTTATCAGATTGTAGAATTTTCTTGC 1328
Query 1129 TTGGTTTTGAAGCTTCTGAAATGCGTAAACTTGCTAAGTTGGTCCGCAGAGGTGGTGGAT 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TTGGTTTTGAAGCTTCTGAAATGCGTAAACTTGCTAAGTTGGTCCGCAGAGGTGGTGGAT 1388
Query 1189 CCCGGTATATGCTGCTTAACGAAAGAATGACTCATATTGTTGTTGGAACTCCTTCAGAGA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 CCCGGTATATGCTGCTTAACGAAAGAATGACTCATATTGTTGTTGGAACTCCTTCAGAGA 1448
Query 1249 GTGAGAAAAGAGAAGCGAGGAGTGTTGCAGCTTCTGGTGTCATTCAAGTAGTCATACCCA 1308
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 GTGAGAAAAGAGAAGCAAGGAGTGTTGCAGCTTCTGGTGTCATTCAAGTAGTCATACCCA 1508
Query 1309 GCTGGCTTGAAGATTGTGATCGTGAGAAAAAAGAAATTCCCGTTCATAAAATATATACTG 1368
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1509 GTTGGCTTGAAGATTGTGATCGTGAGAAAAAAGAAATCCCCGTTCATAATATATATACTG 1568
Query 1369 CTAACCACTTGATTCTTCCAAGAGATTCTGCATGCTTGACCAAGGGATCATTTGTAGGGA 1428
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 1569 CTAACCACTTGATTCTTCCAAGAGATTCTGCATGCTTGACCAAGGGGTCATTTGCAAGGA 1628
Query 1429 TGTCAAGTATGGAACAGAGTAAACATACT-AGCGGTCAGACCATGGCATATGATTCTTCT 1487
|||||||||||||||||| |||| ||||| | || |||||||||| |||||||||||||
Sbjct 1629 TGTCAAGTATGGAACAGACTAAAAATACTCA-CGACCAGACCATGGTATATGATTCTTCT 1687
Query 1488 TCAAGGAGTATTAATGTCTCAAATGGGACAGCAACTTTGCTGGGAAAGAACAAAGAAGCA 1547
||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1688 TCAAGGAGTATCAATGTCTCAAATGGGCCAGCAACTTTACTGGGAAAAAACAAAGAAGCA 1747
Query 1548 ATGCAGGAATTTGGCAGGAAAGATGAGATTCATACAGGAAGAAAAATAGTATCACCCAAG 1607
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1748 ATGCAGGAATTTGGCAGAAAAGATGAGATTCATACAGGAAGAAAAATAGTATCACCCACG 1807
Query 1608 CAAAAAGAAACACTTATTTCCCTTGTAACTAGTAAAAGCGAAGAACAACAGAGTACTCAA 1667
|||||||||||||||||||||||||||||| || ||||| ||||||||| ||||| ||||
Sbjct 1808 CAAAAAGAAACACTTATTTCCCTTGTAACTTGTGAAAGCAAAGAACAACGGAGTATTCAA 1867
Query 1668 TGTGAATTCAGTGGTCAGAACAAGCAAGAAAGAAAGTCATCGGTATTTAAGGGGGAGACA 1727
||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||
Sbjct 1868 TGTGAATTCAGTGGTCAGAACGATCAAGAAAGAAAGTCATCTGTATTTAAGGGGGAAACA 1927
Query 1728 TTTTGTTTCTCGCATTCTTTTCCTGAAGATAGGCGACCTG-ACATCGTGGAATGGGTCAA 1786
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||| ||
Sbjct 1928 TTTTGTTTCTCGCATTCTTTTCCTGAAGATAGGCGACC-GCAAATCGTGGAATGGGTGAA 1986
Query 1787 TCAAGGAGGGGGAGAGGTGGTAAATGATCCTTTGATAAATAATGCACGCTTTACTATTGA 1846
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1987 TCAAGGAGGGGGAGAGGTGGTAAATGATCCTTTGATAAATAACGCACATTTTACTATTGA 2046
Query 1847 ATGCCATGGTGGGTTCCGAAGTGCCGGGACTACCCAAACTATCTATGTCTCAAGTCATTG 1906
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2047 ATGCCATGGTGGGTTCCAAAGTACCGAGACTACCCAAACTATCTATGTCTCAAGTCATTG 2106
Query 1907 GGTTCGATATTGTTTAGAGGTTGGTTGTTTACTTGCTGTTAGTAGTCATATCCTCTACTC 1966
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 GGTTCGAAATTGTTTAAAGGTTGGTTGTTTACTTGCTGTTAGTAGTCATATCCTCTACTC 2166
Query 1967 ACCTCTTCCCTGCCAGACACCTTTGCCTGGATTCGAAAGCCTTTGCATATGTAGTTCCCA 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 ACCTCTTCCCTGCCAGACACCTTTGCCTGGATTCGAAAGCCTTTGCATATGTAGTTCCCA 2226
Query 2027 ACATAAAGAGAAGGATATACCACTCCTGAAAAATTTGTGTGTTGTTCTTGGAGCAAAATA 2086
|||||| |||||| || || |||||||| ||||||| |||| |||||||||||| | |
Sbjct 2227 ACATAATGAGAAGAATGTAGAACTCCTGAGAAATTTGAGTGTCGTTCTTGGAGCAGATTT 2286
Query 2087 TGTGAAAAGACTAACCAGGAAAGTGACGCACTTGCTATGCATCTCTGCAGACGGACATAA 2146
|||| |||||||||||||||||||||| |||||| |||||| || |||| | ||| ||||
Sbjct 2287 TGTGGAAAGACTAACCAGGAAAGTGACTCACTTGATATGCAACTTTGCAAAAGGAGATAA 2346
Query 2147 GTATGAGACAGCTTCCAAGTGGGGAATAGTTTCCGTGACACCTGACTGGCTTTGTGAATG 2206
||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 2347 GTATGTGAGAGCTTCCAAGTGGGGAATAATTTCCGTGACACCTGACTGGCTTTATGAATG 2406
Query 2207 TGTTAGACAGAATCAAGTTGTTTGTCCAGATAACTTCCATCCAAAGGAATCAACCACTCA 2266
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 2407 TGTTAGACAGAATCAAGTTGTTTGTACAGATAACTTCCATCCAAGGGAATTGACCACTCA 2466
Query 2267 AGAA-GCAGG-GTCTGGCTTCGCAAGTCATTTTCATACACAGTTTGTGCCAATGGCCTCA 2324
||| | || | | || | | || || || |||||||||||||| ||||||||||||
Sbjct 2467 AGATCG-AGAAG-CAGGGT-CTCA-GT--TT--CATACACAGTTTGTACCAATGGCCTCA 2518
Query 2325 AGGGACAATGTGTCTCTACTTGTAAGTCACTCCGAAGACAGGGAAACAAAT-CAAAGTTT 2383
||||||| | ||||||||| |||||||||||| ||||||||||||| |||| ||||||||
Sbjct 2519 AGGGACAGTATGTCTCTACCTGTAAGTCACTCTGAAGACAGGGAAA-AAATTCAAAGTTT 2577
Query 2384 TGCTGGCAAAAGTGGTTGCGGTAAAGGTGAATTAAATAACAGACTTGGAGAAATTGGAAA 2443
||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 2578 TGCTGGCAAAAGTGGTTGCGGGAAAGGTGAAGTATATAACAGACTTGGAGAAATTGGAAA 2637
Query 2444 GGAACAGGCTTTTCCGTCTAAGAAGGCAAAACTTTTGAGAGATGGTCAAGAAAGTGATGT 2503
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2638 GGAACAAACTTTTCCGTCTAAGAAGGCAAAACTTTTGAGAGATGGTCAAGAAAGTGATGT 2697
Query 2504 GTATCCTGTGAGAGAACTTCCAAGCAATTGTGATCGCCCTTCGCATTCTGGAGATGGCAT 2563
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2698 GTTTCCTGTGAGAGAACTTCCAAGCAATTGTGATCGTCCTTCGCATTCTGGAGATGGCAT 2757
Query 2564 TGTGTCTGGATATGATGTAGGAAGTGGTCGTGAAGTTCCAGATGTGGCTGATACTATTGA 2623
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2758 TGTGACTGGATATGATGTAGCAAGTGGTCGTGAAGTTCCAGATGTGGCTGATACTATTGA 2817
Query 2624 GGATCTGTTAGAGCAGACTAGTAAAATTCAAGATCAGAAGTCTCCTGGAATGATTTCAGA 2683
|||||||||||||||||| || |||||||||||||||||||||||||| | ||||| |||
Sbjct 2818 GGATCTGTTAGAGCAGACAAGCAAAATTCAAGATCAGAAGTCTCCTGGGAGGATTTTAGA 2877
Query 2684 AAAGACTCATTTTTCAATTAGTGAACAATACAACACCGGGAATCACTGTGTCACTGGCCT 2743
||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||
Sbjct 2878 AAAGACTCATTTTTCAACTAGTGAACAATACAACACTGGGAATCACTCTGTCACTGGCCT 2937
Query 2744 GTCTAGACACTGGATAAACAGGGTCCATAAGAATGACGACAGGGGCAGTCCTCCAGGAGA 2803
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2938 GTCTAGACACTGGATAAACAGGGTCCATAAGAATGACGACATGGGCAGTCCTCCAGGAGA 2997
Query 2804 TGTAACTACAGGCACTTACGGAAACTTTAGTGAGACGCAGACAGAATCACAGGTTGTTGG 2863
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2998 TGCAACTACTGACACTTACGGAAACTTTAGTGAGACGCAGACAGAATCACAGGTTGTTGG 3057
Query 2864 TTACGAGGAAGATCTTTCAGGAAGGCAGATGCTTATAGACAGAGTTAGAACACGAAGCAG 2923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3058 TTACGAGGAAGATCTTTCAGGAAGGCAGATGCTTATAGACAGAGTTAGAACACGAAGCAG 3117
Query 2924 CTTAACATAAAGAGACAGGGTGAGGTGCTCGT 2955
|||||||||||||||||| |||||||||||||
Sbjct 3118 CTTAACATAAAGAGACAGAGTGAGGTGCTCGT 3149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146888809104
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5