BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927139
Length=434
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77370.1 | Symbols: | Glutaredoxin family protein | chr1:29... 691 0.0
> AT1G77370.1 | Symbols: | Glutaredoxin family protein | chr1:29073843-29074796
FORWARD LENGTH=620
Length=620
Score = 691 bits (374), Expect = 0.0
Identities = 412/430 (96%), Gaps = 3/430 (1%)
Strand=Plus/Plus
Query 6 GTGATCGAAACGGCGATGGTTGACCAGAGTCCTCGCCGTGTTGCCGTGGCGGCGCTCCTA 65
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 59 GTGATCGAAACGGCGATGGTTGACCAGAGTCCTCGCCGTGTTGTCGTGGCGGCGCTCCTA 118
Query 66 TTACTAGTGGTTATCAGCGATCTGTCAAATTCTGCGGGAGCTGCGAATTCGGTGTCGGCT 125
|| | |||||| | ||||||| || ||||||||||||||||||||||| ||||| |||
Sbjct 119 TTGTTTGTGGTTCTGTGCGATCTTTCGAATTCTGCGGGAGCTGCGAATTCTGTGTCAGCT 178
Query 126 TTCGTTCAGAACGCCATCTTGTCCAACAAGATCGTCATCTTCTCCAAATCCTACTGCCCG 185
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 TTCGTTCAGAACGCCATCTTGTCCAACAAGATTGTCATCTTCTCCAAATCCTACTGCCCG 238
Query 186 TATTGCTTGCGGTCGAAACGTATCTTCAGCCAACTTAAGGAAGAGCCATTTGTTGTGGAG 245
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 TATTGTTTGCGGTCGAAACGTATATTCAGCCAACTTAAGGAAGAGCCATTTGTTGTGGAG 298
Query 246 CTTGATCAGAGAGAGGACGGAGATCAAATCCAGTATGAGCTTTTAGAATTCGTTGGTCGT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTTGATCAGAGAGAGGACGGAGATCAAATCCAGTATGAGCTTTTAGAATTCGTTGGTCGT 358
Query 306 CGTACTGTCCCGCAAGTTTTTGTAAACGGCAAGCATATTGGTGGATCAGATGATCTTGGA 365
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 CGTACTGTCCCGCAAGTTTTTGTTAACGGCAAGCATATTGGTGGATCAGATGATCTTGGA 418
Query 366 GCTGCTTTGGAGAGTGGTCAGTTGCAAAAGCTTCTTGCTGCAAGTTGACT-TTT-AGGAC 423
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 419 GCTGCTTTGGAGAGTGGTCAGTTGCAAAAGCTTCTTGCTGCAAGTTGA-TATTTGAGGAC 477
Query 424 CTCGAATGTG 433
||||||||||
Sbjct 478 CTCGAATGTG 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20609777090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5