BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927143
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77405.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2169 0.0
> AT1G77405.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:29087145-29088521 FORWARD LENGTH=1377
Length=1377
Score = 2169 bits (1174), Expect = 0.0
Identities = 1313/1381 (95%), Gaps = 5/1381 (0%)
Strand=Plus/Plus
Query 22 ATGAAACCGTCGCAACCGCTATGTAACCGCATTATTGATCAGCTTATTGCCGCAATGATC 81
||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||
Sbjct 1 ATGAAACCGTCGCAACCGCTATGTAACCGCATTGTTGATCAGCTTATTACTGCCATGATT 60
Query 82 CAGAACCGTCCATTCGACGCCGTTCTCGCTTCTTCAACGGTCGCGAATCCATGGACTCAG 141
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 CAGAACCGTCCATTCGACGCCGTTCTCGCTTCTTCAACGGTGGCGAAACCATGGACTCAG 120
Query 142 CAGCTCGTCTCCGATGTCCTCCGCTCTATCCCCAGATTCTTCTTCATTTCCCCACGATCC 201
|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 121 CAGCTCGTCTCCGATGTCCTCCATTCTATCCCCAGATTCTTCTTTATCTCCCCACGATCC 180
Query 202 ATCGGTCGGCAAAAGGGTTTTCGTCACCGGTCGCCGTTAAAGCAGAGAAACCTCAGTGAT 261
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 ATCGGTCGGCAAAAGGGTTTTCGTCACCGTTCACCGTTAAAGCAGAGAAACCTCAGTGAT 240
Query 262 GAATCACAACGACGTCGTTCTGAAGTCCTAGTTCTAGGTCCCGGTGCGTATATAGATCCT 321
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 241 GAATCACAACGACGTCGTTCTGAAGTTCTAGTTCTAGGTCCCGGTGCGTATATGGATCCT 300
Query 322 AAGAAAGTCTCTCTCGGGTTGCAGAAAGCATTGGAGTTCTTCTTTTGGATCGAGACCCAT 381
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 AAGAAAGTCTCTATCGGGTTGCAGAAAGCATTGGAGTTCTTCTTTTGGATCGAAACCCAC 360
Query 382 TTCGGATTTGGTCATAATGAGATCACTTGCAGAGATATGGCTTGTCTATTGGCCAAAGGC 441
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGGGTTTGATCATAATGAGATCACTTGCAGAGATATGGCTTGTCTATTGGCCAAAGGC 420
Query 442 AATGACTTTAAGGGTCTCTGGGATTTTCTCCGGCAAGTCTCTAGAAGAGAGAACGGCAAA 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AATGACTTTAAGGGTCTCTGGGATTTTCTCCGGCAAGTCTCTAGAAGAGAGAACGGTAAA 480
Query 502 AATGTGGTCACAACAGCGTCTATAACGTGTTTGATGAAATGCCTAGGAGAAGAAGGTTTT 561
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AATGTGGTCACAACAGCGTCTATAACCTGTTTGATGAAATGCCTAGGAGAAGAAGGTTTT 540
Query 562 GTTAAAGAGGCATTAGCTACTTTTTATAGGATGAAGGAATATCACTGCAAACCTGATGTT 621
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGAAAGAGGCATTAGCTACATTTTATAGGATGAAGGAATATCACTGCAAACCTGATGTT 600
Query 622 TATGCTTACAATACAATTATCAATGCTCTCTGCCGAGTGGGGAATTTCAAAAAAGCGAGA 681
|||||||||||||||||||||||||| || ||||| ||||||||||| |||||||| |
Sbjct 601 TATGCTTACAATACAATTATCAATGCCCTTTGCCGTGTGGGGAATTTTAAAAAAGCTCGG 660
Query 682 TTTCTGTTGGATCAGATGCAATTACCCGGTTTTCGATACCCACCGGATACCTATACTTAC 741
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 661 TTTCTATTGGATCAGATGCAATTACCGGGTTTTCGGTACCCACCGGATACCTATACTTAC 720
Query 742 ACCATTTTAATTAGCTCGTATTGTAGATATGGGATGCAAACCGGATGCAGAAAGGCCATA 801
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 721 ACCATTTTGATTAGCTCCTACTGTAGATATGGGATGCAAACCGGATGCAGAAAGGCGATA 780
Query 802 AGGAGGAGAATGTGGGAGGCTAATCGAATGTTTAGGGAAATGCTGTTCAGAGGGTTTGTA 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGGAGGAGAATGTGGGAGGCTAATCGAATGTTTAGGGAAATGCTGTTCAGAGGGTTTGTA 840
Query 862 CCCGATGTGGTGACTTATAATTGCTTGATCGATGGATGTTGCAAAACGAATCGGATTGGT 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCCGATGTGGTGACTTATAATTGCTTGATCGATGGATGTTGCAAAACGAATCGGATTGGT 900
Query 922 CGGGCTCTTGAGCTGTTTGAAGATATGAAGACAAAAGGGTGTGTACCGAACCAGGTGACT 981
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 CGGGCTCTGGAGCTGTTTGAAGATATGAAGACAAAAGGGTGTGTACCGAACCAAGTGACT 960
Query 982 TATAATTCTTTCATAAGGTATTATAGTGTTACCAATGAGATAGAAGGTGCAATCGAGATG 1041
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 961 TATAATTCTTTCATAAGGTATTATAGTGTTACTAATGAGATAGAAGGTGCAATAGAGATG 1020
Query 1042 ATGAGGACAATGAAGAAGATGGGTCATGGTGTACCTGGTTCAAGCACGTACACACCGCTA 1101
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1021 ATGAGGACAATGAAGAAGTTGGGTCATGGTGTACCTGGTTCGAGCACGTACACGCCGCTA 1080
Query 1102 ATACACGCTCTTGTTGAGACCAGAAGAGCGGCTGAGGCTCGGGATTTGGTGGTGGAGATG 1161
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1081 ATACACGCTCTTGTTGAGACCAGGAGAGCGGCTGAGGCTAGGGATTTGGTGGTGGAGATG 1140
Query 1162 GTGGATGCTGGGTTGGTTCCGAGAGAGTATACATATAAGTTGGTGTGGGATGCTCTGAGC 1221
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1141 GTGGAGGCTGGGTTGGTTCCGAGAGAGTATACATATAAGTTGGTGTGTGATGCTCTGAGC 1200
Query 1222 TCAGAAGGAATGGCGGGTACACTTGATGAAGAGCTGCATAAGAGAATGAGGGAAGGAATA 1281
||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCAGAAGGACTGGCAAGCACACTTGATGAAGAGCTGCATAAGAGAATGAGGGAAGGAATA 1260
Query 1282 CAACAGAGATATA-CAAGAGTCATGAAGATCAAACCGGTCATGGCTCGAAAGGACGTTGT 1340
||||||||||||| || |||||||||||||||||||| |||||||||||| || |||||
Sbjct 1261 CAACAGAGATATAGCA-GAGTCATGAAGATCAAACCGACCATGGCTCGAAAAGAGGTTGT 1319
Query 1341 CCAAAAATCGGATTTTCACGAGATTGACATGAATCAAAATTATGCAATGGAGGAAATCTG 1400
| ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 1320 TCGAAAAT---ATTTTCACAAGATTGACGGGAATCAAAATTTTGCAATGGAGGAAATCTG 1376
Query 1401 A 1401
|
Sbjct 1377 A 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5