BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927146
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77440.1 | Symbols: PBC2 | 20S proteasome beta subunit C2 | ... 1103 0.0
AT1G21720.1 | Symbols: PBC1 | proteasome beta subunit C1 | chr1... 725 0.0
> AT1G77440.1 | Symbols: PBC2 | 20S proteasome beta subunit C2
| chr1:29096235-29098393 FORWARD LENGTH=1002
Length=1002
Score = 1103 bits (597), Expect = 0.0
Identities = 633/651 (97%), Gaps = 0/651 (0%)
Strand=Plus/Plus
Query 5 AAACCCTAATTTTCCGATGTCGATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGT 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 AAACCCTAATTTTCCGATGTCGATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGT 143
Query 65 AGGGAAGAACTGCTTCGCTATAGCCAGTGATCGGAGGCTTGGTGTACAATTACAAACCAT 124
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 144 AGGGAAGAATTGCTTCGCTATAGCTAGTGATCGGAGGCTTGGTGTGCAATTACAAACCAT 203
Query 125 CGCTACCGATTTTCAGAGAATCTCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGG 184
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 204 TGCTACCGATTTTCAGAGAATATCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGG 263
Query 185 TCTCGCCACCGATGTCCAGACATTGTACCAGCGACTCGTATTTCGTCATAAGTTATATCA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TCTCGCCACCGATGTCCAGACATTGTACCAGCGACTCGTATTTCGTCATAAGTTATATCA 323
Query 245 GCTTAGGGAAGAAAGAGACATGAAGCCAGAAACTTTCGCTAGTCTTGTATCTGCCATTCT 304
||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 324 GCTTAGGGAAGAAAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCT 383
Query 305 TTATGAGAAAAGATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGACTGGGAGATGA 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 384 TTATGAGAAAAGATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGA 443
Query 365 TAACAAACCCTTCATTTGCACTATGGATTCGATTGGAGCCAAGGAGTTAGCTAAAGATTT 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 444 TAACAAACCCTTCATTTGCACTATGGATTCTATTGGAGCCAAGGAGTTAGCTAAAGATTT 503
Query 425 TGTTGTCTCTGGAACTGCTTCAGAATCACTATATGGTGCCTGTGAAGCCATGTTCAAACC 484
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 504 TGTTGTCTCGGGAACTGCTTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACC 563
Query 485 AGATATGGAAGCTGAGGAATTGTTTGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGA 544
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 564 AGATATGGAAGCTGAGGAACTATTCGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGA 623
Query 545 CCGCGATTGTCTTAGTGGGTGGGGAGGTCATGTCTACGTTGTAACACCAAATGAGGTCAA 604
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 624 CCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGTAACACCAAAGGAGGTGAA 683
Query 605 GGAGAGAATCCTGAAGGGAAGGATGGATTGATCTGATATCACATATCTGCT 655
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 GGAGAGAATCCTGAAGGGAAGGATGGATTGATCTGATATCACATATCTGCT 734
> AT1G21720.1 | Symbols: PBC1 | proteasome beta subunit C1 | chr1:7626283-7628262
FORWARD LENGTH=918
Length=918
Score = 725 bits (392), Expect = 0.0
Identities = 559/640 (87%), Gaps = 10/640 (2%)
Strand=Plus/Plus
Query 5 AAACCCTAATTTTCCGATGTCGATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGT 64
||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 96 AAACCCTAAGTTTCCGATGTCGATCTTCGAGTACAATGGAAGTGCTGTTGTTGCTATGGT 155
Query 65 AGGGAAGAACTGCTTCGCTATAGCCAGTGATCGGAGGCTTGGTGTACAATTACAAACCAT 124
||| ||||| || ||||| || |||||||||||||| || ||||| || |||| || ||
Sbjct 156 AGGTAAGAATTGTTTCGCCATCGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACAAT 215
Query 125 CGCTACCGATTTTCAGAGAATCTCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGG 184
||| || ||||| ||||||||||| ||||||||||||| | |||||||||| ||||| ||
Sbjct 216 CGCCACTGATTTCCAGAGAATCTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGG 275
Query 185 TCTCGCCACCGATGTCCAGACATTGTACCAGCGACTCG-TATTTCGTCATAAG-TTATAT 242
||||||||||||||| || ||| | |||||||| || | | |||||||||||| || ||
Sbjct 276 TCTCGCCACCGATGTTCAAACACTATACCAGCG-CTTGGTGTTTCGTCATAAGCTT-TAC 333
Query 243 CAGCTTAGGGAAGAAAGAGACATGAAGCCAGAAACTTTCGCTAGTCTTGTATCTGCCATT 302
|||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 334 CAGCTTAGGGAAGAGAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATC 393
Query 303 CTTTATGAGAAAAGATTTGGCCCATT-CTTGTGCCAACCTGTGATTGCTGGACT-GGGAG 360
||||| ||||| |||||||| || || ||| |||||||||||||||||||| || |||||
Sbjct 394 CTTTACGAGAAGAGATTTGGTCC-TTACTTATGCCAACCTGTGATTGCTGG-CTTGGGAG 451
Query 361 ATGATAACAAACCCTTCATTTGCACTATGGATTCGATTGGAGCCAAGGAGTTAGCTAAAG 420
||||| |||| || ||||||||||| ||||| || || |||||||| |||||||||||||
Sbjct 452 ATGATGACAAGCCTTTCATTTGCACGATGGACTCTATCGGAGCCAAAGAGTTAGCTAAAG 511
Query 421 ATTTTGTTGTCTCTGGAACTGCTTCAGAATCACTATATGGTGCCTGTGAAGCCATGTTCA 480
|||||||||| ||||||||||||||||||||||| ||||| || ||||| || |||| ||
Sbjct 512 ATTTTGTTGTATCTGGAACTGCTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACA 571
Query 481 AACCAGATATGGAAGCTGAGGAATTGTTTGAGACAATTTCACAAGCACTTCTCTCTTCAG 540
| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |
Sbjct 572 AGCCAGATATGGAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATCTG 631
Query 541 TTGACCGCGATTGTCTTAGTGGGTGGGGAGGTCATGTCTACGTTGTAACACCAA-ATGAG 599
||||||| |||||||| ||||| |||||||| ||||| ||| |||||||||||| | |||
Sbjct 632 TTGACCGTGATTGTCTGAGTGGTTGGGGAGGGCATGTTTACATTGTAACACCAACA-GAG 690
Query 600 GTCAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATCTG 639
| |||||||| ||||| ||||||||||||||||||||||
Sbjct 691 ATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATCTG 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5