BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927147
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77450.1 | Symbols: anac032, NAC032 | NAC domain containing ... 1184 0.0
> AT1G77450.1 | Symbols: anac032, NAC032 | NAC domain containing
protein 32 | chr1:29099954-29101261 FORWARD LENGTH=1117
Length=1117
Score = 1184 bits (641), Expect = 0.0
Identities = 750/801 (94%), Gaps = 14/801 (2%)
Strand=Plus/Plus
Query 1 TAAAGGGGAAAATAGGTTAATTATGATGAAATCTGGGGCTGATTTGCAATTTCCACCTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 54 TAAAGGGGAAAATAGGTTAATTATGATGAAATCTGGGGCTGATTTGCAATTTCCACCAGG 113
Query 61 ATTTAGATTTCATCCGACGGATGAAGAGCTCGTCCTCATGTATCTCTGTCGTAAATGCGC 120
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 114 ATTTAGATTTCATCCTACGGATGAGGAGCTAGTCCTCATGTATCTCTGTCGTAAATGCGC 173
Query 121 GTCGCAGCCGATCCCTGCTCCTATCATCACCGAACTCGATTTGTACAGATATGATCCTTG 180
||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||
Sbjct 174 GTCGCAGCCGATCCCTGCTCCGATTATCACCGAACTCGATTTGTACCGATATGATCCTTG 233
Query 181 GGACCTTCCCGACATGGCTTTGTACGGTGAAAAGGAGTGGTATTTTTTCTCACCAAGAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GGACCTTCCCGACATGGCTTTGTACGGTGAAAAGGAGTGGTATTTTTTCTCACCAAGAGA 293
Query 241 TCGAAAATACCCAAACGGTTCAAGACCGAACAGGGCTGCTGGTACTGGGTATTGGAAAGC 300
|||||| || ||||||||||||||||| ||| | || ||||||||||| |||||||||||
Sbjct 294 TCGAAAGTATCCAAACGGTTCAAGACCCAACCGTGCAGCTGGTACTGGATATTGGAAAGC 353
Query 301 CACAGGTGCTGATAAACCGATCGGTCGTCCTAAACCGGTTGGTATTAAGAAGGCTCTAGT 360
|| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 354 TACCGGAGCTGATAAACCAATAGGTCGTCCTAAACCGGTTGGTATTAAGAAGGCTCTAGT 413
Query 361 GTTTTACTCTGGAAAACCTCCAAATGGAGAGAAAACCAATTGGATTATGCACGAATACCG 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GTTTTACTCGGGAAAACCTCCAAATGGAGAGAAAACCAATTGGATTATGCACGAATACCG 473
Query 421 GCTCGCTGACGTGGACCGGTCGGTTCGCAAGAAAAACAGTCTAAGGTTGGACGATTGGGT 480
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 474 GCTCGCTGACGTTGACCGGTCGGTTCGTAAGAAAAACAGTCTAAGATTGGACGATTGGGT 533
Query 481 ACTGTGTCGTATATATAACAAGAAAGGTGTCATCGAGAAGCAACAGA-GCGA----GA-- 533
| ||||||||||||||||||||||||||||||||||||||| || || |||| ||
Sbjct 534 ATTGTGTCGTATATATAACAAGAAAGGTGTCATCGAGAAGCGAC-GAAGCGATATCGAGG 592
Query 534 ACGAGTTAAGGGCTGTGAATGACACGTGTCCACCGGAATCTGTGGAGAGATTGATCGCCG 593
||| ||||| | |||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 593 ACGGGTTAAAGCCTGTGACTGACACGTGTCCACCGGAATCTGTGGCGAGATTGATCTCCG 652
Query 594 GCTCGGAGCAAGTGGTGTCACCGGAATTCACGTGTAGCAACGGTCGGTTGAGTAATGCCC 653
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GCTCGGAGCAAGCGGTGTCACCGGAATTCACGTGTAGCAACGGTCGGTTGAGTAATGCCC 712
Query 654 TGGATTTTCCGTTTAATTACGTAGATGCCATCGCCGATAACGAGATTGTCTCACGGCTAT 713
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 713 TTGATTTTCCGTTTAATTACGTAGATGCCATCGCCGATAACGAGATTGTGTCACGGCTAT 772
Query 714 TGAGCGGGAACCAGATGTGGTCGACG----TTGGATCCACTTGTGGTTAGGCAGAGAACT 769
|| ||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 773 TGGGCGGGAATCAGATGTGGTCGACGACGCTTG-ATCCACTTGTGGTTAGGCAGGGAACT 831
Query 770 TTCTGAGT-GTCACGTGCGAT 789
|||||||| ||||||||||||
Sbjct 832 TTCTGAGTTGTCACGTGCGAT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5