BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927157
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50960.1 | Symbols: NBP35, ATNBP35 | nucleotide binding prot... 1101 0.0
> AT5G50960.1 | Symbols: NBP35, ATNBP35 | nucleotide binding protein
35 | chr5:20734167-20736055 FORWARD LENGTH=1384
Length=1384
Score = 1101 bits (596), Expect = 0.0
Identities = 885/1023 (87%), Gaps = 26/1023 (3%)
Strand=Plus/Plus
Query 24 GAGAACGCGAACGAGAATTGCCCAGGTCC-CGAATCCGAAACTGCTGGAAAGTCAGATTC 82
||| |||| |||||| ||||||||||||| | |||| ||| |||||||||| ||||||||
Sbjct 122 GAGGACGCTAACGAGCATTGCCCAGGTCCTC-AATCAGAATCTGCTGGAAAATCAGATTC 180
Query 83 TTGCGCAGGTTGCCCTAATCAGGAAGCATGTTCCACTGCTCCTAAGGGACCTGACCCAGA 142
||| || || ||||||||||||||||| ||| | ||||||||||| ||||||||||||||
Sbjct 181 TTGTGCTGGCTGCCCTAATCAGGAAGCTTGTGCTACTGCTCCTAAAGGACCTGACCCAGA 240
Query 143 TTTGGTTGCTATAGCTGAAAGAATG-GCAACCGTGAAGCACAAGATTCTGG-TTTGCTCA 200
||||||||| ||||| || || ||| || || || |||||||||||||||| |||| ||
Sbjct 241 TTTGGTTGCCATAGCAGAGAGGATGAGC-ACTGTTAAGCACAAGATTCTGGTTTTG-TC- 297
Query 201 T-GCAAAGGTGGTGTTGGTAAGAGCACTTTCTCAACTCAGCTTTCGTTTGCCCTAGCTGG 259
| |||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| || ||
Sbjct 298 TGGCAAAGGTGGAGTTGGTAAGAGTACTTTCTCAGCTCAGCTCTCGTTTGCCCTTGCGGG 357
Query 260 CATGGTTCATCAAGTAGGCCTCATGGACATAGATATATGCGGCCCAAGCATCCCTACAAT 319
||||| |||||||||||| || |||||||| ||||||||||| ||||||||||| | |||
Sbjct 358 CATGGATCATCAAGTAGGTCTGATGGACATTGATATATGCGGTCCAAGCATCCCAAAAAT 417
Query 320 GCTAGGCCTCCAAGGGCACGAGATTTACCAGAGCAA-CTTGGGATGGTCACCGGTTTATG 378
| |||| || ||||||| |||||| ||||||| || ||| |||||||| ||||||||||
Sbjct 418 GTTAGGACTTGAAGGGCAAGAGATTCACCAGAGTAACCTT-GGATGGTCTCCGGTTTATG 476
Query 379 TTGAAGACAACCTCGCTGTCATGTCCATAGGTTTCATGGTTCACCCCTCCGAA-TCTGAT 437
| ||||||||||| | ||||||||||||||||||||| | | |||| || ||||||
Sbjct 477 TGGAAGACAACCTTGGTGTCATGTCCATAGGTTTCAT-G--C-TCCCT---AACTCTGAT 529
Query 438 G-AGCCTGCCATCTGGAGAGGTCCACGCAAGAACGGTCTCATCAAACAGTTTTTAAAAGA 496
| || ||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 530 GAAG-CTGTGATCTGGAGAGGGCCACGCAAGAATGGTCTCATCAAGCAGTTCTTAAAAGA 588
Query 497 CGTTTACTGGGGAGAGATCGATTTCCTTGTGGTTGATTCCCCACCAGGAACCTCAGACGA 556
||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||||| ||
Sbjct 589 CGTCTACTGGGGAGAGATTGATTACCTTGTTGTTGATGCCCCACCAGGAACCTCAGATGA 648
Query 557 AAACATCACCATCGTCCAGTCCCTTGC-ACACACGGGGATCGACGGTGCTATCATTGTCA 615
| ||||| |||||||||||| |||| | || |||||||||||||||||| ||||||||||
Sbjct 649 ACACATCTCCATCGTCCAGTACCTT-CTACCCACGGGGATCGACGGTGCCATCATTGTCA 707
Query 616 CCACCCCTCAAGAAATCTCCTTGATAGATGTCAGAAAAGGAGTCAACTTTTGCAAGAAAA 675
| || || || ||| |||||||||| ||||||||||||| ||| | |||||||||||||
Sbjct 708 CGACACCGCAGGAAGTCTCCTTGATTGATGTCAGAAAAGAAGTGAGCTTTTGCAAGAAAG 767
Query 676 TTGGAGTCCCTGTGCTAGGAGTTGTAGAGAACATGAGCGGTTTATCTCAACCGTTGACGG 735
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 768 TTGGAGTCCCGGTGCTAGGAGTAGTAGAGAACATGAGTGGTTTATCTCAACCGTTGAAGG 827
Query 736 ATATCAAGTTCATGAAGCTGGTAACTGAAACCGGCTCCTCCATCGACGTGACCCAAGACA 795
|| |||||||||||||||||| || || |||||||||||||| ||||||| |||||
Sbjct 828 ATGTCAAGTTCATGAAGCTGGCGACAGAGACCGGCTCCTCCATTAACGTGACTGAAGACG 887
Query 796 TGATCTCTTGCATAAGAGATAATGCTCCAGAGCTTCTCAATGTCGTGGCTTGCAGTC-AA 854
| ||| ||||| ||||| | || || |||||||||||| | |||||||||| || | ||
Sbjct 888 TAATCGCTTGCTTAAGAAAAAACGCACCAGAGCTTCTCGACATCGTGGCTTGTAG-CGAA 946
Query 855 GTTTTTGACAGCAGCGGAGGCGGTGCAGAGAGAATGTGTCAGGAAATGGGAGTGCCGTTT 914
|| |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 947 GTGTTTGACAGCAGCGGAGGCGGTGCAGAAAGAATGTGTCGGGAAATGGGAGTACCGTTT 1006
Query 915 CTTGGGAAAGTTCCTTTGGATCCACAGCTTTGCAGAGCAGCCGAGCAAGGTAAGTCATGC 974
||||||||||||||| |||||||||| ||||||| |||||| || |||||||||||||||
Sbjct 1007 CTTGGGAAAGTTCCTATGGATCCACAACTTTGCAAAGCAGCTGAACAAGGTAAGTCATGC 1066
Query 975 TTTGAGGATAACAAGTGTTCTGTTA-GTGCACCCGCGCTTAAGAGCATCATAGAAAAAGT 1033
||||||||||||||||||| | || | ||||| |||||||| ||||||||| | |||||
Sbjct 1067 TTTGAGGATAACAAGTGTT-TAATAAGCGCACCTGCGCTTAAAAGCATCATACAGAAAGT 1125
Query 1034 CGT 1036
|||
Sbjct 1126 CGT 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5