BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927161
Length=3941
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77600.3 | Symbols: | ARM repeat superfamily protein | chr1... 2846 0.0
> AT1G77600.3 | Symbols: | ARM repeat superfamily protein | chr1:29152751-29162448
REVERSE LENGTH=4706
Length=4706
Score = 2846 bits (1541), Expect = 0.0
Identities = 1761/1868 (94%), Gaps = 12/1868 (1%)
Strand=Plus/Plus
Query 3 AAGAAGCGGTACACCGGAATGGAGAAAACTCCGACGCAGATTGTTTCCGAACTGGGTTCT 62
||| ||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 275 AAGTAGCGGTACACCTGAATGGAGAAAACTCCGACGCAGATAGTTTCCGAATTATGTTCT 334
Query 63 CGTTTGCTTCAATTATCTCGTCCCAACAAGGATTCTCTGGTCAAG-TTACTACGGGAAGT 121
|| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 335 CGGTTGCTACAATTATCTCGTCCCAACAAGGATTCTCTGGTCAAGCTT-CTACGGGAAGT 393
Query 122 TGCTAATACGCTGTC-ACAAATCGACCAGCCTTCAGCCACAAACAAGGAAAAAGGTCTGA 180
||||||||| || || | ||||||||||||||||||| || ||||||||||||||| |||
Sbjct 394 TGCTAATACTCTCTCTA-AAATCGACCAGCCTTCAGCTACCAACAAGGAAAAAGGTTTGA 452
Query 181 AACTGTTAGAAGCTGAGTTAAGACCTCTGAAGAAATCCATTATCAAGCATGGTCTTCTTA 240
||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 453 AACTGATAGAAGCTGAGTTAAGACCTCTGAAGAAGTCCATTATCAAGCATGCTCTTCTTA 512
Query 241 AGAATCGTGATAACGACGTGAGTCTCTTGGTCACTGTTTGTGTCTCCGAGCTTTTCCGGA 300
| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 513 AAAATCGTGATAATGACGTGAGTCTTTTGGTCACTGTCTGTGTCTCCGAGCTTTTCCGGA 572
Query 301 TTTTAGCACCTAATCGACCTTTTGAAGACAAATATCTCAGGGATATCTTCACTCTCTTTC 360
||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 573 TTTTAGCACCTCATCTACCTTTTGAAGACGAGTATCTCAGGGATATCTTCACTCTCTTTA 632
Query 361 TTGCTGAGTTTTCTGAGCTATCTGATACTGTAAGCCCTTATTTCTCTAAGAGGGCGAAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TTGCTGAGTTTTCTGAGCTATCTGATACTGTAAGCCCTTATTTCTCTAAGAGGGCGAAAA 692
Query 421 TCTTGGAGACTGTCTCTCGATTGAAATGTTGTCTGCTAATGCTGGACGAGGACTGCCTAG 480
|||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 693 TCTTGGAGACAGTCTCTCGATTGAAATTTTGTCTGCTAATGCTGGACGAGGATTGCCAAG 752
Query 481 ATTTAGCTCACGAGATGTTCAACATGTTTTTCTCTCTTGTTAGAGAGCACCATCAACAAA 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ATTTAGTTCACGAGATGTTCAACATGTTTTTCTCTCTTGTTAGAGAGCACCATCAACAAA 812
Query 541 GTTTAATTAACCAGAAAAATATTAAAACGCAGCAGCGAAAGGCTAACACGCAGCAAACAC 600
|||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 813 GTTTAATTAATCAGAAAAGTATGAAAACGCAGCAGCGAAAGGCTAACACGCAGCAAACAC 872
Query 601 AACAAAGTTTATTTAACAACATCTTGA-ATATAATGACTGATATTCTGGAGGAAGAGGCA 659
|||| ||||||||||||||||| || | |||||||| |||| |||||||||||||||||
Sbjct 873 AACATAGTTTATTTAACAACAT-TTTAGCTATAATGAGTGATGTTCTGGAGGAAGAGGCA 931
Query 660 AATTCGTCTTTTGTCGTTGCTATTCTGGAAAATCTTGTGAAGGAGGGAGAGGATACAACT 719
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 932 AATTCGTCTTTTGTCGTTGTTATTCTGGAAAATCTTGTGAAGGAAGGAGAGGATACAACT 991
Query 720 TCTGCTCCTTCTAAGCTCGCCAGTTCTCTCATTCAAAGCTGTACCGACAGGCTGGAGCCG 779
|||| || |||||||||||||||||||||| |||| ||| |||||||||| ||||||
Sbjct 992 TCTGGAGCTGATAAGCTCGCCAGTTCTCTCATTGAAAGGTGTGCCGACAGGCTCGAGCCG 1051
Query 780 TTAATTTGCAGCTTTTTAACATCATGCTTTATGGAGAAAGATTCCATCCAGACCAATCTC 839
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1052 TTAATTTGCAGCTTTTTAACATCATGTTTTATGGAAAAAGATTCCATCCAGACCAATCTC 1111
Query 840 AAAGATTCTTATCACGAAATCATATTTAAGATCTCCTTAAATGCTCCCCAGATGCTGCTA 899
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1112 AAAGATTCTTATCACGAAATCATATTTAAGATCTCCTTAATTGCTCCCCAGATGCTGCTA 1171
Query 900 GCAGTAATCCCCAAGTTGACCCAGGAACTACTGACTGATCAGGTCGATGTGCGAATAAAA 959
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 GCAGTTATCCCAAAATTGACCCAGGAACTACTGACTGATCAGGTCGATGTGCGAATAAAA 1231
Query 960 GCCCTTAACTTAGCTGGAAGGATTTTTGCGCAGCCTAAGCACTGTTTAAGTTCTTACGGA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1232 GCCCTTAACTTAGCTGGAAGGATTTTTGCGCAGCCTAAGCACTGTTTAAGTTCTTACGTA 1291
Query 1020 GAGACATATCAAGATCTTTATGCAGAGTTCTTGAGAAGATTCTCAGATAAATCTGCAGAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 GAGACATATCAAGATCTTTATGCAGAGTTCTTGAGAAGATTCTCAGATAAATCTGCAGAA 1351
Query 1080 GTCAGAATGGCTGCACTGAAATGTGGCAAACAGTGTTACTTTGCGAATCCGTCTGGAAAT 1139
||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1352 GTCAGAATGGCTGCATTGAAATGTGGCAAACAGTGTTACTTCGCGAATCCATCTGGAAAT 1411
Query 1140 AAAGCATCTGGAGTTCTCACTGCTATCCAAGAACGCCTATTAGATTTTGATGATAGGGTT 1199
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1412 AAAGCATCTGGAGTTCTCACTGCTATCCAGGAACGCCTATTAGACTTTGATGATAGGGTT 1471
Query 1200 CGAACACAGGCTCTGGTTGTTGCTTGTGATATTATGAAGTTTGATATGAAGTATGTTCCT 1259
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1472 CGAACACAGGCTCTAATTGTTGCTTGTGATATTATGAAGTTTAATATGAAGTATGTTCCT 1531
Query 1260 TTGAATCTGATTTCTGAAGCCAGTGAGAGGCTTCGGGATAAGAAGATATCTGTTAGGAAG 1319
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TTGAATCTAATTTCTGAAGCCAGTGAGAGGCTTCGGGATAAGAAGATATCTGTTAGGAAG 1591
Query 1320 AAGGCTCTGCAGAAGCTGACAGAAGTATATCAAGATTATTGTGACAAGTGTTCAGAAGGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 AAGGCTCTGCAGAAGCTGACAGAAGTATATCAAGATTATTGTGACAAGTGTTCAGAAGGA 1651
Query 1380 GACATGACAATAAATGATCATTTTGAGCAAATCCCATGCAAAATCTTGCTACTTTGCTGC 1439
||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1652 GACATGACAATTACTGATAATTTCGAGCAAATCCCATGCAAAATCTTGCTACTTTGCTGC 1711
Query 1440 GATAAAAATTGTGATGAATTCAGGTCTCAAAATTTGGAACTTGTGCTTTCCGATGATCTT 1499
|| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1712 GAGAAAAATTGTGAAGAATTCAGGTCCCAAAATTTGGAACTTGTGCTCTCCGATGATCTT 1771
Query 1500 TTTCCTCGCCTTCTTCCAGTTGAGGAGAGGATGCGGCACTGGGTCCAATGCTTTGCCATT 1559
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1772 TTTCCTCGCCTTCTTCCCGTTGAAGAGAGGATGCGGCACTGGGTCCAATGCTTTGCCATT 1831
Query 1560 ATGAATCATATCCACATT-AAGTCACTCAATTCAATTTTATCTCAGAAAAGAAGGTTGCA 1618
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 ATGAATCATATCCAC-TTGAAGTCACTCAATTCAATTTTATCTCAGAAAAGAAGGTTGCA 1890
Query 1619 AAATGAATTGCGGCAATGCCTAACCCTCTGGAGGAAAGCTAAGG-ATGACAATATAGAGG 1677
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1891 AAATGAATTGCGGCATTGCCTAACCCTCTGGAGGAAAGCTAAGGTA-GACAATATAGAAG 1949
Query 1678 AAGTTCAAAGAAAGAAAAAGAGCTACTTTGTAAAGCTTTCAGCTTGCTTTCCAGATGCTT 1737
||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 1950 AAGCACAAAGAAAGAAAAAGAGCTACTTCGTTAAGCTGTCAGCATGCTTTCCAGATGCTT 2009
Query 1738 CCGAGGCAGAAGATTTCTTTCAAAAACTAGACCAAATGAGGGATGCATCAATTTATGATG 1797
| |||||||||||| ||||| ||||| |||||| |||||||||||||||||||| |||||
Sbjct 2010 CTGAGGCAGAAGATCTCTTTGAAAAATTAGACCGAATGAGGGATGCATCAATTTTTGATG 2069
Query 1798 TCTTAACTTTACTGCTGGATGAACTGTCATCCACAAAGGCTCAAATTATTAAAGAGA--A 1855
||||||||||||||||||| ||||||||||||||||| || || |||||||||| || |
Sbjct 2070 TCTTAACTTTACTGCTGGAGGAACTGTCATCCACAAATGCCCAGATTATTAAAGTGATCA 2129
Query 1856 GTTTCTCA 1863
|||||||
Sbjct 2130 TTTTCTCA 2137
Score = 1251 bits (677), Expect = 0.0
Identities = 852/931 (92%), Gaps = 33/931 (4%)
Strand=Plus/Plus
Query 3042 CCA-AATAAGGCTAAGTCTCGTACCCAAAATGCTTTGGAACAAAGTTTCATTGAAAGAGT 3100
||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |
Sbjct 3670 CCAGAATAAGGCTAAGTCTCGTACCCGAAATGCGCTGGAACAGAGTTTCATTGAAAGAAT 3729
Query 3101 AGTTCATATATTCCAATCACAGATCTCCACGCATGATCAGAGGTGTCATAAAGATAGCCT 3160
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 3730 AGTTCATATATTCCAATCACAGATCTCCATGCATGATCAGAGGTGTCAAAAAGATAGCCT 3789
Query 3161 AGCAGTTGGTTCGCAAGACAAAGTTTTACCTCCATTATCGGGCAATCAAATCGAAACGTC 3220
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 3790 AGCAGTTGGTTCGGAAGATAAAGTTTTACCTCCATTATTAGGCAATCAAATCGAAACGTC 3849
Query 3221 AATTACTGGTTCAACCGAAGCCAGCAAAAACAACACGAGGTGTAGCAGGAAGCGAACTCA 3280
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 3850 GATTACTGGTTCAACCGAAGCCAGCCAAAATAACACGAGGTGTAGCAGGAAGCGAACTCA 3909
Query 3281 TCTGGGAGAACATATTTCTTGTAACTCCTTATCTTTGAGAACAGTTGAGTCGGAAATTCC 3340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3910 TCTGGGAGAACATATTTCTTGTAACTCCTTATCTTTGAGAACAGTTGAGTCGGAAATTCC 3969
Query 3341 TATAAAGAAGCTAGAAAGACACAATACTTGTTCAAAGGAGAGTGTCGAAGCAAGTGTAAG 3400
|||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 3970 AATAAAGAAGCTAGAAAGACACACTACTTGTGCAAAGGAGAGTGTCAAAGCAAGTGTAAG 4029
Query 3401 CAATAAAATTACATCTTCCAAACACTCCGGGGTAGTATCTGCTTTAAAGGATATCAGCAA 3460
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 4030 CAATAAAATTACATCTTCCAAACACTCCGGGGTAGTATCTGCTTTAAAAGATATTAGCAA 4089
Query 3461 CCATGGTGAAGCAATCATTGGGAAGCGGATTAAATTACTCTCTCCCACAGATGGATGTTT 3520
||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4090 CCACGGCGAAGCAATCATTGGGCAGCGGATTAAATTACTCTCTCCCACAGATGGATGTTT 4149
Query 3521 CTATCCGGGCACTGTTGAGAAGTTTAATTCTAAAAGCAACTCTCACAAGATTATTTTCGA 3580
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4150 CTATCCTGGCACTGTTGAGAAGTTTAATTCTAAAAGCAACTCTCACAAGATTATTTTCGA 4209
Query 3581 CAATGGTGATGTTGAATTGGTTTGCTTGGGTAGCGAGAGCTGGGAGACCCTGAGCCATGA 3640
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4210 CAATGGGGATGTTGAATTGGTTTGCTTGGATAGCGAGAGCTGGGAGACCCTGAGCCATGA 4269
Query 3641 ATTCATGGGGCAACAGGAAATATTGGGAAAGGAGACGGAATCTTTTGGTTCTCGGAACTG 3700
|| |||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||
Sbjct 4270 ATCCATGGGGCAACAGGAACGATTGGGAAAGGAGACAGAATCTTATGGTTCTCGGAATTG 4329
Query 3701 CGTCCCTGAAATCAGTCATACACTTGCAAAGGCTGA-TGCCCAAAAGCAGAAAACTAGAA 3759
|||||||||||| |||||||| |||||||||| | | |||||||||||||| ||||| ||
Sbjct 4330 CGTCCCTGAAATTAGTCATACGCTTGCAAAGGTT-ACTGCCCAAAAGCAGACAACTACAA 4388
Query 3760 CAAAGCAGCAGAACAAAAAGTTGCCTGCCAAATTGAATCCTCCAGCTG--C-A------A 3810
|||||||||||||||||||| ||||||||||||||||||||||||||| | | |
Sbjct 4389 CAAAGCAGCAGAACAAAAAGGTGCCTGCCAAATTGAATCCTCCAGCTGTGCCATGTTTCA 4448
Query 3811 --A-GTCAA-AAAA--G------GGAAATTCAGTTTGTGGAGAAGGATCAGTTTCAGAAG 3858
| |||| |||| | |||||||| | || |||||||||||||||||||||||
Sbjct 4449 TGATGTCAGCAAAATCGAAAAAAGGAAATTCGGATTCTGGAGAAGGATCAGTTTCAGAAG 4508
Query 3859 TGACCGACACAAGTGACAATATTGGACTCA-GAAGAAGTCGGAGACAGAGAACTTCTTA- 3916
||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| ||
Sbjct 4509 TGACCGACACAAGTGACAATATTGGAC-CAAGAAGAAGTCGGAGACAGAGAATTTCGTAG 4567
Query 3917 -A----GA-CCTCTTTAACGACGGAGGTCCT 3941
| || ||| ||||||||||||| ||||
Sbjct 4568 GAACATGATCCTGTTTAACGACGGAGTTCCT 4598
Score = 948 bits (513), Expect = 0.0
Identities = 561/585 (96%), Gaps = 0/585 (0%)
Strand=Plus/Plus
Query 1851 GAGAAGTTTCTCAACATGTTTGGTGCTAAACATTCTCTTTTCGAGTTCCTGCGCATACTT 1910
|||||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 2165 GAGAAGTTTCTCAAGATGATTGGTGTTAAACATTCTCTTTTCGAGTTCTTGCGCATACTT 2224
Query 1911 TCTACAAAATGTTCGCCTAATATATTTAGCTCAGAGCATGTTCAGTGTCTTTTGAATCAG 1970
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 TCTACAAAATGTTCGCCTAGTATATTTAGCTCAGAGCATGTTCAGTGTCTTTTGAATCAG 2284
Query 1971 CTTTGTGGCAGCACCTCTGTTAACACGCAATTGAAGGCTCCTTCCATCAAACTTCTTCTG 2030
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2285 CTTTGTGGCAGCACCTCTGCCAACACGCAATTGAAGGCTCCTTCCATCAAACTTCTTCTG 2344
Query 2031 GTTATTCTCAACATCTTCCCTTCTTACCTGAGAGGTTCAGAAAAGCAGTTTCTGAAGCTG 2090
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2345 GTAATTCTCAACATGTTCCCTTCTTACCTGAGAGGTTCGGAAAAGCAGTTTCTGAAGCTG 2404
Query 2091 CTAGAGGAGAATTATTCAGCTGCTGACGAGCTAACTGTAGTTTTATCAAAGGCAGCTCCT 2150
|||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 2405 CTAGAGGAGAATGATTCAGCTGCTGATGAGCTAATTGTAGTTTTATCAAAGGCAGCTCCT 2464
Query 2151 TATATTTCTGTCAACTTCGGTGACTATTACCCTGTTCTGGAGAAGGTGTGTCTGGAGGGT 2210
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2465 TATATTTCTGTCAACTTCGGTGACTATTACCCTGTTCTGGAGAAGGTTTGTCTGGAGGGT 2524
Query 2211 ACTCGTTCTCAGGCAAAATGTGCGGTTTCTGCCATCGGTTCATTGGCTGGATCATCTGAC 2270
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2525 ACTCGTTCTCAGACCAAATGTGCGGTTTCTGCCATCAGTTCATTGGCTGGATCATCTGAA 2584
Query 2271 AAATCTGTATTTTCCGAGTTATGCGAGATGCTCATGGATTCTTTGCTGGGTGGACGGAAC 2330
||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2585 AAATCAGTCTTTTCTGAGTTATGCGAGATGCTCATGGATTCTTTGCTGTGTGGACGGAAC 2644
Query 2331 ATTCCAACAACTTTGCAGTCTTTGGCGTGTGTTGGGCAATATTCTGTTTTGGCATATGAC 2390
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2645 ATTCCAACAACTTTGCAGTCTTTGGCGTGTGTTGGGCAATATTCTGTTTTGGAATATGAC 2704
Query 2391 AATATATATGAAGATATCACCAGCTACATATACCAGGTTTTTCAA 2435
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2705 AATATATATGAAGATATCACCAGCTACATATACCGGGTTTTTCAA 2749
Score = 536 bits (290), Expect = 6e-151
Identities = 314/326 (96%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 2718 AGATACATCAATGGATTCATCAACAATGCTACAAGAGAATCTCGGACATGTCGGGATTTA 2777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3209 AGATACATCAATGGATTCATCAACAAGGCTACAAGAGAATCTCGGACATGTCGGGATTTA 3268
Query 2778 GATCAAGGAGAATCACTCACTGATAGTCCAGCTTATATGATAGTGTTCCTAATTCATGTT 2837
|||||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 3269 GATCAAGGGGAATCACTCACTGATAGTCCAGTTTACATGACAGTGTTCCTAATTCATGTT 3328
Query 2838 CTTGCACATGACCCAGAGTTCCCTTCAGAAGACTGCAGGGACGAGCATGTCTATGCTCGC 2897
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3329 CTTGCACATGACCCAGAGTTCCCTTCAGAAGACTGCAGGGACGAGCATATCTATGCTCGC 3388
Query 2898 TTTTGTGGCCCTCTGTTCTCGGTCTTACAGGTGTTTCTTAGTATCAACAATAATGGTTTT 2957
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3389 TTTTGTGGCCCTCTGTTCTCGGTCTTACAGGTGTTACTTAGTATCAACAATAATGGTTTT 3448
Query 2958 ACTATCAAGGAAACCGCCCCTTTCTTGTTCTGTATCTTCCGTGCAATTAAAAGAGCTGAG 3017
|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 3449 ACCATCAAGGAAACCGCCCCTTTTTTGTTTTGTATCTTCCGTGCAATTAAAAGAGCTGAA 3508
Query 3018 GATGCTGTTGATTCTCGTAAAACGCC 3043
||||| ||||||||||||||||||||
Sbjct 3509 GATGCAGTTGATTCTCGTAAAACGCC 3534
Score = 274 bits (148), Expect = 5e-72
Identities = 239/277 (86%), Gaps = 29/277 (10%)
Strand=Plus/Plus
Query 2436 ATATATGGGCTCAAAACACTTGTGAAAAGTTTCTTGCCTCGTCATGGTCAAGTCGTAAGG 2495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2819 ATATATGGGCTCAAAACACTTGTGAAAAGTTTCTTGCCTCGTCATGGTCAAGTCGTAAGG 2878
Query 2496 AAAATCGAGGACTTGCTAAACATTTTGAAGAAAACACTAAAATCACAAGGACACGATGGC 2555
||||| || ||||||||||||||||||||||||||| |||||| | ||| | ||
Sbjct 2879 AAAATTGACGACTTGCTAAACATTTTGAAGAAAACATTAAAAT--C----ACA--A-GG- 2928
Query 2556 ATCAAATC-ATGGTGCTTATTTGCTCTTGAAATTTGTAGCGAGGACACAGGGGCTAATGT 2614
| | | | || | || | || ||| | | ||||||||||||| ||||||||
Sbjct 2929 A-C--A-CGAT-G-GC--A-----TC---AAA-TCAT-GCGAGGACACAGGAGCTAATGT 2970
Query 2615 TAGACTGGCTGCTGCTAAAGCTGTTCTATTGCTTTCAAGGAAATGGGACCTTCATATTTC 2674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2971 TAGACTGGCTGCTGCTAAAGCTGTTCTATTGCTTTCAAGGAAATGGGACCTTCATATTTC 3030
Query 2675 TCCTGAAATTTTCGGTCTAACCATTTTGATGGCAAAG 2711
||||||| ||||| |||| ||||||||||||||||||
Sbjct 3031 TCCTGAAGTTTTCCGTCTTACCATTTTGATGGCAAAG 3067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 196353414902
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5