BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927169
Length=3229
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77680.1 | Symbols: | Ribonuclease II/R family protein | ch... 4831 0.0
> AT1G77680.1 | Symbols: | Ribonuclease II/R family protein |
chr1:29191834-29196287 REVERSE LENGTH=3846
Length=3846
Score = 4831 bits (2616), Expect = 0.0
Identities = 3037/3237 (94%), Gaps = 41/3237 (1%)
Strand=Plus/Plus
Query 1 AGAG-TTTATAGTG-T-TAAGCGATGAAGAGTGCGTCGACGGTGGAACAATCAGTTGAAA 57
|||| ||||||||| | ||||| ||||||||||||||| | |||||||||||||||||
Sbjct 302 AGAGTTTTATAGTGTTATAAGCCATGAAGAGTGCGTCGTC---GGAACAATCAGTTGAAA 358
Query 58 GAATTGAAAATGGTCACAAGAAGAAGAGGAACAGGCCTCAGAAACATATTCGTCGATCTA 117
|||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 359 GAATCGAAAACGGTCACAAGAAGAAGAGGAACAGGCCTCAGAAACAAAATCGTCGATCTA 418
Query 118 AACACAGCTCAGTACCGATAGAAGATACACATGTGGAGGAGTCATCAGATGGTAGA-ACT 176
| || ||||||||||||||||||||| |||||||||||||||| | |||||||||| | |
Sbjct 419 AGCAAAGCTCAGTACCGATAGAAGATGCACATGTGGAGGAGTCGTTAGATGGTAGAGA-T 477
Query 177 AGTAGTAGGAGTAAAGCGAAAGATTCTACTTCTTCATCGAAGCAGCAGAGATCGGAC-AA 235
||||||||||||||||| ||||||||||||||||||||||||||||||||| | | ||
Sbjct 478 AGTAGTAGGAGTAAAGCTAAAGATTCTACTTCTTCATCGAAGCAGCAGAGA-C---CTAA 533
Query 236 T-CCTAATGAACTTGAAGCTATGAGAGCCTCTAATGTTGCTTTCAATTCTATGCCGCCTA 294
| || | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 534 TACC-GACGAACTTGAAGCTATGAGAGCGTCTAATGTTGCTTTCAATTCTATGCCGCCTA 592
Query 295 TGCGTTTTGAGGGGCGAGCAGATACTGGTTAT-CCAGGGAGATCTGCAAGTCCGTTGCTT 353
||| || || || | | | ||||||| ||| ||||||||||||||||||| |||
Sbjct 593 TGC-----GA---GC-AG-A-A-AGTGGTTATCCCA-GGAGATCTGCAAGTCCGTTACTT 639
Query 354 TCATCTCCTCAAGTTAGTAAGCAATTGTTATCCAAGTCGTGCCCTGATCCTAGGGCTTGT 413
|| || ||| |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 640 TCTTCACCTGAAGTTAGTAAGCAATTGTTATCGAAGTCTTGCCCTGATCCTAGGGCTTGT 699
Query 414 GAGCAGTCTCCTAGG-ATGGATGGTGACTTGTTCCAGCAAATTGAAGGTTCCTCTCAGCG 472
|||||||||||| || ||| ||||||| ||||| |||||||||||||||||||| || ||
Sbjct 700 GAGCAGTCTCCT-GGAATGAATGGTGAATTGTTTCAGCAAATTGAAGGTTCCTCACAACG 758
Query 473 GAAGATTTTCTCTTCACACTGGTCTCTTGATGCTGTGAGCC-AAGCTTTAGAGAAAGGTG 531
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 759 AAAGATTTTCTCTTCACACTGGTCTCTTGATGCTGTGA-CCGAAGCTTTAGAGAAAGGTG 817
Query 532 AAGCTTTTAAAGCGCTATTTCGGGTGAATGCTCATAATCGCAATGAGGCTTACTGTAAGA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 AAGCTTTTAAAGCGCTATTTCGGGTGAATGCTCATAATCGCAATGAGGCTTACTGTAAGA 877
Query 592 TCGATGGAGTCCCTACTGATATTCTAATCAATGGAAATGTTGGCCAAAATAGAGCAGTGG 651
|||||||||||||||| || ||||||||||||||||||||| |||||| |||||||||||
Sbjct 878 TCGATGGAGTCCCTACAGACATTCTAATCAATGGAAATGTTTGCCAAAGTAGAGCAGTGG 937
Query 652 AAGGTGATATTGTTGTTATAAAATTGGATCCGCTCTCACTGTGGCCCAAGATGAAAGGAT 711
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AAGGTGATACTGTTGTTATTAAATTGGATCCGCTCTCACTGTGGCCCAAGATGAAAGGAT 997
Query 712 TTGTTACTGAAAGTGTTGCTAAGCCTGATGGAACGAACAGTCCCCCAGAGAAAGATGACA 771
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 998 TTGTTACTGAAAGCGCTGCTAAGCCTGAAGGAACGAACAGTCCCCCAGAGAAAGATGACA 1057
Query 772 AAAATGCTCGACAAAAGAATGCTATTGATGTGGTGGAAGGTTTTGAAGATGTGTTCTTGG 831
|||| ||||| ||||| |||| |||||||||||| |||||||||||||||| ||||| |
Sbjct 1058 AAAAAGCTCGTCAAAAAAATGGTATTGATGTGGTAGAAGGTTTTGAAGATGGGTTCTCGA 1117
Query 832 CAAACAACTCTTCAGTTATAGGACAAGGAGCTAAGAACGGTGTTACTCACAGTTCTTCAC 891
|||||| || |||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 1118 AAAACAAATCATCAGTTATAGGAAAAGGAGCTAAGAACGGTGTTACTCCCAGTTCTCCAC 1177
Query 892 CATTACTGGATTCATGTTTGGGTTCTTTTTGTGAGCAGAAAGGAAATTGCAGTGTGGTTG 951
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1178 CATCACTGGATTCATGTTTGGGTTCTTTTTGTGAGCAGAAAGGAAATTGCAGTGCGGTTG 1237
Query 952 AAAAGCTATGCGGCATCCTTAGTTCCTTCCCCCACAAACGACCAACTGGACAAGTAGTTG 1011
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 ATAAGCTATGCGGCATCCTTAGTTCCTTCCCCCACAAACGACCAACTGGACAAGTAGTTG 1297
Query 1012 CTGTTGTTGAAAAATCACTTGTAAGGGATTCTATCGTTGGCTTGCTTGATGTCAAGGGAT 1071
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 CTGTTGTTGAAAAGTCACTTGTAAGGGATTCTATCGTTGGCTTGCTTGATGTCAAGGGAT 1357
Query 1072 GGATTCATTACAAGGAAAGTGATGCAAAAAGGTGCAAGTCTCCTTTGTCTCTTTCTGATG 1131
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 1358 GGATTCATTACAAGGAAAGTGATCCAAAAAGGTGCAAGTCTCCTCTGTCTCTTTCGGATG 1417
Query 1132 ATGAATATGTCCAACTGATGCCTGCAGACCCTAGGTTTCCTAAATTGATTGTTCCCTTCC 1191
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1418 ATGAATATGTCCAGCTGATGCCTGCAGACCCTAGGTTTCCTAAATTGATTGTCCCCTTCC 1477
Query 1192 ATGTCTTACCTGGAAGCATTAGAGCAAGACTTGAGAATTTGGATCCAACTCTCGAGGCAG 1251
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1478 ATGTCTTACCTGGAAGCATTAGAGCAAGACTTGAGAATTTGGATCCAAATCTCGAGGCAG 1537
Query 1252 AGCTGGTAGCTGCCCAAATTGTAGACTGGGGCGAAGGGTGTCCATTTCCCGTAGCCCAAA 1311
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1538 AGCTGGTAGCTGCCCAAATTGTAGACTGGGGCGAAGGGAGTCCATTTCCTGTAGCCCAAA 1597
Query 1312 TTACACATCTATTTGGCCGAGGCAGTGAATTGGAGCCTCAGATCAATGCGATATTATATC 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 TTACACATCTATTTGGCCGAGGCAGTGAATTGGAGCCTCAGATCAATGCGATATTATATC 1657
Query 1372 AAAACTCGGTTTGCGAGTCTGACTTTTCTCCTGGCTCGCTTACTAGTCTTCCACATGTGC 1431
| |||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||
Sbjct 1658 AGAACTCGGTTTGCGATTCTGACTTTTCTCCAGGATCGCTTACTAGTCTTCCACGTGTGC 1717
Query 1432 CTTGGGAAGTACCAGAAGAAGAGGTTCAACTTAGAAAAGATCTGAGAGACCTGTGTGTAT 1491
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1718 CTTGGGAAGTACCAGAAGAAGAGGTTCAACGTAGAAAAGATCTGAGAGACCTGTGTGTAT 1777
Query 1492 TAACTATCGACCCCTCAACGGCTACAGATCTTGATGATGCTCTATCAGTGCAAAGTTTAC 1551
|||| |||||||| || || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1778 TAACCATCGACCCTTCGACAGCTACAGATCTCGATGATGCTCTATCAGTGCAAAGTTTAC 1837
Query 1552 CCGGCGGGTTTTTTAGAGTCGGTGTTCACATTGCTGATGTTTCCTACTTTGTTTTACCAG 1611
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1838 CCGGCGGTTTTTTTAGAGTCGGTGTTCACATTGCTGATGTCTCCTACTTTGTTTTACCAG 1897
Query 1612 AGACTGCTCTTGACACAGAAGCTCAGTTTAGGTCCACGAGTGTTTACTTGCTCCAGAGAA 1671
|||||||||| ||||||||||||| ||||||||| || |||||||||||| | |||||||
Sbjct 1898 AGACTGCTCTCGACACAGAAGCTCGGTTTAGGTCAACCAGTGTTTACTTGATGCAGAGAA 1957
Query 1672 AAGTATCAATGTTGCCTCCATCACTATCAGAGAACATATGTTCACTTACTCCAGGAGCTG 1731
|| |||||||||||||||||| ||| ||||||||| || ||||||||| |||||||||||
Sbjct 1958 AAATATCAATGTTGCCTCCATTACTGTCAGAGAACGTAGGTTCACTTAGTCCAGGAGCTG 2017
Query 1732 ATAGACTTACTTTTTCTATCTTCTGGGATTTAAATAGAGAAGGGGATGTGATAGATCGCT 1791
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2018 ATAGACTTGCTTTTTCTATCTTGTGGGATTTAAATAGAGAAGGGGATGTGATAGATCGCT 2077
Query 1792 GGATTGGTCGTACTGTTATACGGTCGTGCTGCAAGCTTTCATATGACCATGCTCAAGACA 1851
||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 GGATTGGCCGTACTATCATACGGTCGTGCTGCAAGCTTTCATATGACCATGCTCAAGACA 2137
Query 1852 TTATAGATGGGAAAAGTGATGGTGCAGAAAATGGCTGGCCTGCGTTGCATGGATCTTTCG 1911
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2138 TTATAGATGGCAAAAGTGATGTTGCAGAAAATGGCTGGCCTGCGTTGCATGGATCTTTCA 2197
Query 1912 AGTGGAGTGATGTAATTCGATCTGTCAAACAGCTTAGTGAGATTTCCACCACTTTAAGGC 1971
| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2198 AATGGTGTGATGTAACTCGATCTGTCAAACAGCTTAGTGAGATTTCCACCACTTTAAGGC 2257
Query 1972 AAAAAAGATTTAGAAATGGGGCTTTGCAGCTGGAGAATTCGAAGCCTGTTTTTCTGTTTG 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2258 AAAAAAGATTTAGAAATGGGGCTTTGCAGCTGGAGAATTCGAAGCCTGTTTTTCTATTTG 2317
Query 2032 ATGAACATGGAGTTCCATATGATTTTGTGATGTCTTCTAGAAAGGGTTCAAATTTTCTTG 2091
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 2318 ATGAACATGGAGTTCCATATGATTTTGTGACGTGTTCTAGAAAGGGTTCGAATTTTCTTG 2377
Query 2092 TTGAGGAGTTTATGCTCTTAGCAAATATGACAGCGGCTGAGGTTATTTCTCAAGCTTACC 2151
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2378 TTGAGGAGTTTATGCTCTTAGCAAATATGACAGCAGCTGAGGTTATTTCTCAAGCTTACC 2437
Query 2152 CTGCTAGCGCATTGCTCCGGAGGCATCCAGAACCAAATACGCGCAAGCTCAAAGAATTTG 2211
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2438 GTGCTAGCTCATTGCTCCGGAGGCATCCAGAACCAAATACTCGCAAGCTCAAAGAATTTG 2497
Query 2212 AAGGCTTTTGTTCAAAGCATGGTATGGATTTGGACATTTCTTCTTCTGGCCAACTCCAGG 2271
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2498 AAGGGTTTTGTTCTAAGCATGGTATGGATTTGGACATTTCTTCTTCTGGCCAACTTCAGG 2557
Query 2272 AGTCGTTGGAGAAAATCACTGGAAACCTACA-GGATGACTCAGTTTTTGTAGATATTCTG 2330
| || ||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 2558 ATTCATTGGAGAAAATCACTGGAAACCT-CAAGGATGACTCAGTTTTTGTGGATATTCTC 2616
Query 2331 AACAATTATGCTATAAAACCTATGCAGTTAGCATCTTACTTCTGCACTGGGAATTTGAAG 2390
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2617 AACAATTATGCTATAAAACCTATGCAACTAGCATCTTACTTCTGCACTGGGAATTTGAAG 2676
Query 2391 GACAGTGTTGCTGAGTGGGGACACTATGCACTAGCTGTTCCTCTTTATACTCACTTCACA 2450
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2677 GACAGTGTTGCTGAGTGGGGACACTATGCACTAGCTGTTCCTCTCTATACTCACTTCACA 2736
Query 2451 TCTCCTCTTCGACGGTACCCAGACATAGTCGTTCATCGTGCGATAGCTGCTGCTCTTGAG 2510
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 2737 TCTCCTCTTCGACGGTACCCAGACATAGTCGTTCACCGTGCGTTAGCTGCTGCTCTTGAG 2796
Query 2511 GCTGAGGAGTTGTACTCAAAGCTGAAGCAAACATCAATTGATGAAGTGG-GAAGCTGTTT 2569
||||||||||| |||||||||| |||||||||| |||||||||||| || ||||||||||
Sbjct 2797 GCTGAGGAGTTATACTCAAAGCAGAAGCAAACAGCAATTGATGAAG-GGAGAAGCTGTTT 2855
Query 2570 CACCGGCATTCATTTCAACAAAGATGCTGCTGAATCTATGGAGGGCAAGGAAGCATTATC 2629
||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2856 CACCGGCATCCATTTCAATAAAGACGCTGCTGAATCTATCGAGGGCAAGGAAGCATTATC 2915
Query 2630 AGTCGCTGCTTTGAAACATGGGGTTCCCTCCACTGAAATACTTTCTGATGTCGCTGCTTA 2689
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2916 GGTTGCTGCTTTGAAACATGGTGTTCCCTCCACTGAAATACTCTCTGATGTCGCTGCTTA 2975
Query 2690 TTGCAATGAGAGGAAGCTGGCTGCTCGAAAAGTCAGAGATGCATGTGATAAGCTCTACAC 2749
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2976 TTGCAATGAGAGGAAGCTGGCTGCTCGAAAAGTCAGAGATGCATGTGATAAGCTTTACAC 3035
Query 2750 TTGGTTTGTGCTGAAGAAAAAAGAGGTTTTTCCGTGTGAAGCTAGAGTAATGAACTTGGG 2809
|||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 3036 TTGGTTTGTGCTGAAGCAAAAGGAGATTTTTCCGTGTGAAGCTAGAGTAATGAACTTGGG 3095
Query 2810 ATCAAGATTTATGACTGTTTACATTAGCAAGCTTGGCATTGAACGGAGAATCTACTACGA 2869
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3096 ATCAAGATTTATGACTGTTTACATTAGCAAGCTTGGCATTGAACGGAGAATATACTACGA 3155
Query 2870 CCAAATCGAAGGCTTGTGTGCAGACTGGCTAGAGGCAACATCAACGTTAATCCTTGATAA 2929
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 3156 CCAAATCGAAGGCTTGTGTGCAGACTGGCTAGAGGCAACATCAACGTTAATCGTCGATAA 3215
Query 2930 ACTATATTCCAAGAGAGGTGGAAGAGGCTATTTCAAGCCCTTGAAGGAAGCTGTCTATTT 2989
||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 3216 ACTCTATTCCAAGAGAGGTGGAAGAGGCTTTTTCAAGCCCATGAAGGAAGCTGTCTATTT 3275
Query 2990 GGTGAGTCCTTGTGATCTATGTGTTGCAAAATGCAGCGCATTGTCCGTCCATGACACCGA 3049
||||||||||||||| | || |||||||||||||| |||||||| ||||||||||| ||
Sbjct 3276 GGTGAGTCCTTGTGAAGTGTGCGTTGCAAAATGCAGTGCATTGTCTGTCCATGACACTGA 3335
Query 3050 GTCATCAGAAGCTGTGTCAAAAGACGAGGTTACCCCCGCGGTTTTCCCTTTGACCATCCA 3109
|||| |||| || ||||||| ||| |||||| |||| |||||||| ||||||||||||||
Sbjct 3336 GTCACCAGAGGCCGTGTCAATAGATGAGGTTGCCCCTGCGGTTTTTCCTTTGACCATCCA 3395
Query 3110 ACTTTTCTCAACCATTCCTGTGGTTCTTCACGCTGTTGGTGGAGATGATGGTCCGCTCGA 3169
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3396 ACTTTTCTCGACCATTCCTGTGGTTCTTCATGCTGTTGGTGGAGATGATGGTCCGCTCGA 3455
Query 3170 TATAGGAGCGAGACTCTACATGAGTTCATACTATTATTAGATGATTGGAGCAAAAGA 3226
||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 3456 TATAGGAGCAAGGCTCTACATGAGTTCATACTATTA---GAT-ATTGGAGCAAAAGA 3508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160634551486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5