BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927185 Length=376 Score E Sequences producing significant alignments: (Bits) Value AT1G77830.1 | Symbols: | RING/U-box superfamily protein | chr1... 357 4e-98 > AT1G77830.1 | Symbols: | RING/U-box superfamily protein | chr1:29267160-29267752 REVERSE LENGTH=558 Length=558 Score = 357 bits (193), Expect = 4e-98 Identities = 225/240 (94%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 119 CAGA-CTCGTACCAATTGCTCCACCAACAACGGAGATCGTAGATTGTTACCAAAGTTCGG 177 |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 321 CAGACCT-GTACCAATTGCTCCACCAACGACGGAGATCGTAGATTGTTACCAAAGTTCGG 379 Query 178 AAT-TGTGTTGTCTCTGTGAAAAAGGGTATCCGAAAGAAAACGAGATTGTTCATAAAACA 236 ||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 380 AATCT-TGTTGTCTCTGTCAAAAAGGGTATCCGAAAGAAGACGAGATTGTTCATAAAACA 438 Query 237 AAATGCAATCACATGTTTCACGCAACTTGTATCTCTCGTTACTTGTTGCACACTCCTCGA 296 ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 439 AAATGCAATCATATTTTTTACGGAACTTGTATCTCTCGTTACTTGTTGCACACTCCTCGA 498 Query 297 TGCCCTGTTTGCTCCGTTGAGTTACCACCTGCCGACATCCGAACTCTTCTCTTCTTCTAA 356 ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct 499 TGCCCTGTTTGCTCCGTTGAGTTGCCACCTGTCGACATCCGAACTTTTCTCTTCATCTAA 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17694247648 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5