BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927185
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77830.1 | Symbols: | RING/U-box superfamily protein | chr1... 357 4e-98
> AT1G77830.1 | Symbols: | RING/U-box superfamily protein | chr1:29267160-29267752
REVERSE LENGTH=558
Length=558
Score = 357 bits (193), Expect = 4e-98
Identities = 225/240 (94%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 119 CAGA-CTCGTACCAATTGCTCCACCAACAACGGAGATCGTAGATTGTTACCAAAGTTCGG 177
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 321 CAGACCT-GTACCAATTGCTCCACCAACGACGGAGATCGTAGATTGTTACCAAAGTTCGG 379
Query 178 AAT-TGTGTTGTCTCTGTGAAAAAGGGTATCCGAAAGAAAACGAGATTGTTCATAAAACA 236
||| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 380 AATCT-TGTTGTCTCTGTCAAAAAGGGTATCCGAAAGAAGACGAGATTGTTCATAAAACA 438
Query 237 AAATGCAATCACATGTTTCACGCAACTTGTATCTCTCGTTACTTGTTGCACACTCCTCGA 296
||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 439 AAATGCAATCATATTTTTTACGGAACTTGTATCTCTCGTTACTTGTTGCACACTCCTCGA 498
Query 297 TGCCCTGTTTGCTCCGTTGAGTTACCACCTGCCGACATCCGAACTCTTCTCTTCTTCTAA 356
||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||
Sbjct 499 TGCCCTGTTTGCTCCGTTGAGTTGCCACCTGTCGACATCCGAACTTTTCTCTTCATCTAA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5