BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927187
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77850.1 | Symbols: ARF17 | auxin response factor 17 | chr1:... 2368 0.0
AT2G07677.1 | Symbols: | auxin-responsive factor (ARF) -relate... 556 2e-157
> AT1G77850.1 | Symbols: ARF17 | auxin response factor 17 | chr1:29272313-29275419
FORWARD LENGTH=2076
Length=2076
Score = 2368 bits (1282), Expect = 0.0
Identities = 1586/1732 (92%), Gaps = 23/1732 (1%)
Strand=Plus/Plus
Query 1 GTTTACAGTGATAACAGATACCTATGTCACCGCCGTCGGCAACCGCCGGTGACATCAACC 60
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GTTTACACTGAAAACAAATACCTATGTCACCGCCGTCGGCAACCGCCGGTGACATCAACC 129
Query 61 ACCGTCAAGTCGACCCAAGGATCTGGCGCGCTTGTGCTGGTGCCTCCGTTCAGATCCCTC 120
||||| |||| ||||| | ||||||||||||||||||||| |||||||| |||||||||
Sbjct 130 ACCGTGAAGTAGACCCGACGATCTGGCGCGCTTGTGCTGGAGCCTCCGTCCAGATCCCTG 189
Query 121 TCC-TCTACTCTAGGGTTTACTACTTCCCTCAAGGTCATGTGGAGCACTGTTGCCCTCTC 179
||| || ||||||||||||||||||| || |||||||| || ||||||||||||||||||
Sbjct 190 TCCTTC-ACTCTAGGGTTTACTACTTTCCACAAGGTCACGTTGAGCACTGTTGCCCTCTC 248
Query 180 ATCTCTACTCTTCCTTCGTCTACCTCTCCGGTTCCATGTCTCATCACTTCCATCCAGTTG 239
|||||||||||||||| || ||||| |||||||||||| |||||||||| || ||||||
Sbjct 249 CTCTCTACTCTTCCTTCCTCCACCTCGCCGGTTCCATGTATCATCACTTCAATTCAGTTG 308
Query 240 CTCGCCGATCCGATCACTGACGAGGTTTTTGCTCACCTTGTTCTTCAACCGGTGACGCAG 299
|||||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 309 CTCGCCGATCCGGTCACCGACGAGGTCTTTGCTCACCTTATTCTTCAACCGATGACGCAG 368
Query 300 GAGCAGTTTACTCCGACTAATTATTCAAGATTCGGTAGATACGATGGCGATGTTGATGAT 359
|||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||
Sbjct 369 CAGCAGTTTACTCCGACTAATTATTCACGATTCGGCAGATTCGATGGCGATGTTGATGAT 428
Query 360 AACAACAAGGTGACTACCTTCGCCAAGATTCTCACGCCTTCTGATGCTAACAATGGAGGT 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 429 AACAACAAGGTGACTACCTTCGCCAAAATTCTCACGCCTTCTGATGCTAACAATGGAGGT 488
Query 420 GGATTTTCGGTTCCTCGTTTCTGTGCTGATTCCGTCTTTCCTCCGCTTGATTTTCAAATC 479
|| || || ||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 489 GGCTTCTCCGTTCCTCGTTTCTGTGCTGATTCCGTCTTCCCTCTGCTTAATTTTCAAATC 548
Query 480 GATCCACCGGTTCAGAAGCTCTACATCACCGATATCCATGGAGCTGTTTGGGATTTCAGG 539
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 549 GATCCACCGGTTCAGAAGCTCTACGTCACTGATATCCATGGAGCTGTTTGGGATTTCAGG 608
Query 540 CATATCTATCGCGGTACACCGAGGCGTCACTTGTTAACCACCGGATGGAGCAAGTTCGTG 599
||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||
Sbjct 609 CATATCTATCGCGGTACACCGAGGCGTCACTTGCTAACAACGGGATGGAGTAAGTTCGTC 668
Query 600 AATAGCAAGAAGCTAATCGCTGGCGATTCGGTGGTGTTTATGAGGAAAGCTGCAGATGAG 659
|||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 669 AATAGCAAGAAGCTCATCGCTGGAGATTCGGTGGTGTTTATGAGAAAATCTGCAGATGAG 728
Query 660 ATGTTTATGGGTGTTAGGCGAACACCGATCTCAAGCAGCGGCGGAGGAAGCAGCTATTAC 719
||||| || || |||||| |||| |||||||||||||||| ||||||||| |||||||||
Sbjct 729 ATGTTCATCGGCGTTAGGAGAACTCCGATCTCAAGCAGCGACGGAGGAAGTAGCTATTAC 788
Query 720 GGCGGGGATGAGTACAACGGCTATTACAGCCAGAGTAGCGTTGCTAAGGAAGATGACGGG 779
|| || |||||||| ||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct 789 GGAGGAGATGAGTATAACGGTTACTACAGTCAGAGTAGCGTTGCCAAGGAAGATGATGGG 848
Query 780 AGTGCGAAGAAGACGTTTAGGAGGTCTGGGAAAGGGAAATTGACCGCTGAGGCTGTGACG 839
||| ||||||||||||||||||| |||||||| || || ||||| |||||||||||||||
Sbjct 849 AGTCCGAAGAAGACGTTTAGGAGATCTGGGAATGGTAAGTTGACTGCTGAGGCTGTGACG 908
Query 840 GAGGCGATCAATAGAGCAG-CTAAGGGATTGCCATTTGAGGTGGTGTATTATCCGACTGC 898
|| |||||||||||||| | || ||||||| |||||||||||||||| ||||||| ||||
Sbjct 909 GATGCGATCAATAGAGC-GTCTCAGGGATTACCATTTGAGGTGGTGTTTTATCCGGCTGC 967
Query 899 TGGATGGTCAGAATTTGTGGTGAGAGCTGAAGATGTTGAGTCCTCCATGTCTATGTTTTG 958
||||||||| || ||||| ||||||||||||||||||||||| || |||||||||| |||
Sbjct 968 TGGATGGTCTGAGTTTGTTGTGAGAGCTGAAGATGTTGAGTCTTCAATGTCTATGTATTG 1027
Query 959 GACTCCTGGGACTCGAGTCAAGATGGCTATGGAGACTGAGGATTCCTCTCGGATCACTTG 1018
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1028 GACTCCTGGGACTCGAGTCAAGATGGCTATGGAGACTGAAGATTCTTCTCGGATCACATG 1087
Query 1019 GTTTCAGGGCATTGTTTCCTCTACTTATCAAGAAACTGGTCCATGGCGTGGATCTCCATG 1078
|||||| ||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1088 GTTTCAAGGCATCGTTTCCTCTACTTATCAGGAGACCGGTCCATGGCGTGGATCTCCATG 1147
Query 1079 GAAACAGCTTCAGATCACATGGGATGAACCTGAGATTCTGCAAAACGTGAAGAGGGTGAA 1138
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GAAGCAGCTTCAGATCACATGGGATGAACCTGAGATTCTGCAAAACGTGAAGAGGGTGAA 1207
Query 1139 TCCTTGGCAAGTGGAAATTGTTGCAAATGCAACCCAACTTCATGCTACTTTCCCTCCAGC 1198
||| |||||||||||||||| |||| ||||||| ||||| ||| | |||||||||||||
Sbjct 1208 TCCATGGCAAGTGGAAATTGCTGCACATGCAACTCAACTGCATACCCCTTTCCCTCCAGC 1267
Query 1199 AAAGAGATTGAAGTATCCACAACCC---GGAGGGTTCTTGAGTGGAGATGACGGAGATAT 1255
|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1268 AAAGAGGTTGAAGTATCCACAACCCGGAGGAGGGTTCTTGAGTGGAGATGATGGAGAAAT 1327
Query 1256 CCCCTATTCTCAAAGAGGACTGTCTAGTGCAGCAGCACCTGATCCAAGTCCTTATATGTT 1315
|| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1328 CCTTTATCCTCAAAGTGGACTGTCTAGTGCAGCAGCACCTGATCCAAGTCCTTCTATGTT 1387
Query 1316 CCCGTATTCTACATTTCCTGCTGGCATGCAGGGAGCCAGGCAATATGATTTTGGGTCTTT 1375
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 CTCGTATTCTACATTTCCTGCTGGCATGCAGGGAGCCAGGCAATATGATTTTGGGTCTTT 1447
Query 1376 CAATCCAACCGGATTCATTGGAGAGAA-TCCTCCCCAG-TCATGCACCAATAACTTCTTC 1433
||||||||||||||||||||||| ||| |||||||||| | || |||||||||||||||
Sbjct 1448 CAATCCAACCGGATTCATTGGAG-GAAATCCTCCCCAGCT-ATTCACCAATAACTTCTTA 1505
Query 1434 AGTCCGCTTCCAACCGGGTTGGGAAAAGTGTCGACTGAGATGA--AT-TTTGGCAGTCCA 1490
||||||||||| | ||||||||||||||||||||||||| | |||||||||||
Sbjct 1506 AGTCCGCTTCCT---GATTTGGGAAAAGTGTCGACTGAGATGATGAACTTTGGCAGTCCG 1562
Query 1491 CCATCAGATAACTTATCGCCTAATAGCAACACCACTAATCTGTCCTCTGGAAACGACCTG 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1563 CCATCAGATAACTTATCGCCTAATAGCAACACCACTAATCTGTCCTCTGGAAATGACCTG 1622
Query 1551 GTTGGAAACCGAG-CCCCCATTTCAGCA-AAAGCTAACTCGATTCGGTTATTTGGCAAGA 1608
||||||||||||| ||||| ||||| | |||| ||||||||||| ||| ||||||||||
Sbjct 1623 GTTGGAAACCGAGGCCCCC-TTTCAA-AGAAAGTTAACTCGATTCAGTTGTTTGGCAAGA 1680
Query 1609 CCATTACCGTGCAGGAGCGTTCTGAGAGCGGTCTTGCAGAGTCTGGCTTGTGTGAAGAGG 1668
|||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1681 TCATTACCGTGGAGGAGCATTCTGAGAGCGGTCCTGCAGAGTCTGGCTTGTGTGAAGAGG 1740
Query 1669 ATGGCAGCAAAGAGTCCAGCGACAATGAGACACAATTGTCCTTGA-CACATG 1719
|||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1741 ATGGCAGCAAAGAGTCCAGCGACAATGAGACACAGTTGTCCTT-ATCACATG 1791
> AT2G07677.1 | Symbols: | auxin-responsive factor (ARF) -related,
low similarity to auxin response factor 10 (Arabidopsis
thaliana) GI:6165644; blastp match of 82% identity and 6.9e-77
P-value to GP|3717296|emb|CAA03738.1||A63701 unnamed protein
product {unidentified} | chr2:3278376-3280384 FORWARD LENGTH=2009
Length=2009
Score = 556 bits (301), Expect = 2e-157
Identities = 466/545 (86%), Gaps = 13/545 (2%)
Strand=Plus/Plus
Query 555 ACACCGAGGCGTCACTTGTTAACCACCGGATGGAGCAAGTTCGTGAATAGCAAGAAGCTA 614
||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 658 ACACCGAGGAGGCACTTGTTAACCACCGGATGGAGCAAGTTCGTGAACAATAAGAAGCTA 717
Query 615 ATCGCTGGCGATTCGGTGGTGTTTATGAGGAAAGCTGCAGATGAGATGTTTATGGGTGTT 674
|||||||| ||||| || || |||||||||||| | || |||||||||||||| |||||
Sbjct 718 ATCGCTGGTGATTCTGTTGTATTTATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTA 777
Query 675 AGGCGAACACCGATCTCAAGCAGCGGCGGAGGAAGCA-GCTAT-TACGGCGGGGATGAGT 732
|||||| |||| ||||| || | || |||||||| || ||| | |||||||| |||||||
Sbjct 778 AGGCGAGCACCAATCTCTAGTAACGTCGGAGGAA-CAAGCT-TCTACGGCGGAGATGAGT 835
Query 733 ACAACGGCTATTA-CAGC-CAGA-GTAG-CGTTGCTAAGGAAGATGACGGGAGTGCGAAG 788
|| | ||||| ||| || | | || ||||||||||||||| ||||| |||||||||
Sbjct 836 ACTGTAGTTATTATCAGAGCA-ATGGAGGCGTTGCTAAGGAAGACGACGGAAGTGCGAAG 894
Query 789 AAGACGTTTAGGAGGTCTGGGAAAGGGAAATTGACCGCTGAGGCTGTGACGGAGGCGATC 848
||| |||||||||| ||||||||||||||||||| ||||| ||||| | ||||||||
Sbjct 895 AAGGGGTTTAGGAGGACTGGGAAAGGGAAATTGACGGCTGAAGCTGTCTCTGAGGCGATT 954
Query 849 AATAGAGCAGCTAAGGGATTGCCATTTGAGGTGGTGTATTATCCGACTGCTGGATGGTCA 908
|||||||||||| |||| ||||| ||||||||||| |||||||| || |||||||||||
Sbjct 955 AATAGAGCAGCTCAGGGTTTGCCGTTTGAGGTGGTTTATTATCCTACGGCTGGATGGTCG 1014
Query 909 GAATTTGTGGTGAGAG-CTGAAGATGTTGAGTCCTCCATGTCTATGTTTTGGACTCCTGG 967
|| |||||||||| || | |||||||||||| | |||||| |||| || |||||||||||
Sbjct 1015 GACTTTGTGGTGA-AGGCAGAAGATGTTGAGGCTTCCATGGCTATATTCTGGACTCCTGG 1073
Query 968 GACTCGAGTCAAGATGGCTATGGAGACTGAGGATTCCTCTCGGATCACTTGGTTTCAGGG 1027
||| |||| |||||||| |||||||||||||| || || ||||| ||||||||||||||
Sbjct 1074 TACTAGAGTGAAGATGGCCATGGAGACTGAGGACTCTTCGCGGATTACTTGGTTTCAGGG 1133
Query 1028 CATTGT-TTCCTCTACTTATCAAGAAACTGGTCCATGGCGTGGATCTCCATGGAAACAGC 1086
||||| ||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1134 GATTGTCTTC-TATACATATCAGGAAACTGGTCCATGGCGTGGATCTCCTTGGAAACAGC 1192
Query 1087 TTCAG 1091
|||||
Sbjct 1193 TTCAG 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87148146120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5