BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927190

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77580.2 | Symbols:  | Plant protein of unknown function (DU...   163    1e-39


> AT1G77580.2 | Symbols:  | Plant protein of unknown function (DUF869) 
| chr1:29144027-29147584 REVERSE LENGTH=2768
Length=2768

 Score =  163 bits (88),  Expect = 1e-39
 Identities = 116/129 (90%), Gaps = 3/129 (2%)
 Strand=Plus/Plus

Query  1     CTTCTTCTTCCATTGAAATTGA-CTCATGGATGATTTTCTTGAGATGGAACGTCTTGTAG  59
             |||| |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct  1142  CTTCCTCTTCCATTGAACTTGATCTCATGGGTGATTTTCTTGAGATGGAACGTCTTGTAG  1201

Query  60    CATTTCCCGAGAC-CCTAGATGGGAGCGGTAAGAGTGGACCTGAATCTGTAACAGGAGAG  118
             |||| || ||||| || |||||||| ||||||||||||||||||||| || |||| ||||
Sbjct  1202  CATTGCCTGAGACGCC-AGATGGGAACGGTAAGAGTGGACCTGAATCAGTTACAGAAGAG  1260

Query  119   GCTGTTGTT  127
             | |||||||
Sbjct  1261  GTTGTTGTT  1269


 Score =  110 bits (59),  Expect = 1e-23
 Identities = 146/184 (79%), Gaps = 21/184 (11%)
 Strand=Plus/Plus

Query  133   GAAAGAGGAGCTCGA-AAGTGAAGTTAAATGTAACAGAGAAGAGGCTGGTATTCAGATCA  191
             |||| | |||||||| || ||||||||||||||||||||||||||||| | |||| || |
Sbjct  1359  GAAACATGAGCTCGAGAA-TGAAGTTAAATGTAACAGAGAAGAGGCTGTTGTTCATAT-A  1416

Query  192   AA-AACTCGTTGGCTGCTGAAGTAGAAGTATTGACTTGC-CGAATTAAGCAACTTGAAGT  249
              | |||||           | | | | ||| |||||| | |||| |||| ||||||||| 
Sbjct  1417  GAGAACTC-----------A-G-A-A-GTACTGACTT-CTCGAACTAAGGAACTTGAAGA  1460

Query  250   GAAGTTAGAGAAGTTGGAAGCAGAGAAAGATGAGCTCAAAAGGGAAGTAAAATGTAACAG  309
              ||||| || ||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct  1461  AAAGTTGGAAAAGTTAGAAGCAGAGAAAGAGGAGCTCAAAAGTGAAGTTAAATGTAACAG  1520

Query  310   AGAA  313
             ||||
Sbjct  1521  AGAA  1524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5