BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927204
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78010.1 | Symbols: | tRNA modification GTPase, putative | ... 2719 0.0
> AT1G78010.1 | Symbols: | tRNA modification GTPase, putative
| chr1:29333500-29336451 FORWARD LENGTH=1872
Length=1872
Score = 2719 bits (1472), Expect = 0.0
Identities = 1641/1724 (95%), Gaps = 5/1724 (0%)
Strand=Plus/Plus
Query 2 TGAGCTTAGGTTGCAGTGTCGATGGTAAATCTCCTCTCCTTCCGTTCCGTCGGCGTTCAT 61
|||| ||||||||||||||| ||||| | |||||||| ||||||||| ||||||||| ||
Sbjct 15 TGAGTTTAGGTTGCAGTGTCAATGGTGAGTCTCCTCTGCTTCCGTTCAGTCGGCGTTTAT 74
Query 62 CTTCTCCGACATGCTACGCCGATCATAACCCGAGGCGGAAGAATCTCGAAACCCATCTCG 121
||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 75 CTTCTCCGACAAGCTACGCCGATTATAACCCGAGGCGGAAGAATCTCGAGACCCATCTCT 134
Query 122 AAAAATCTCTGCTTTGTCTTATTCTCTTCGTCTCCTAAAACCTCTCTTCTTAAACCTCGC 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AAAAATCTCTGCTTTGTTTTATTCTCTTCGTCTCCTAAAACCTCTCTTCTTAAACCTCGC 194
Query 182 GCTGC-GTCATCAGAGGACAATTCTCTTGTGTTTAGAGGCGATGAGCGTGTGGTGGGTCT 240
||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 195 GCT-CAGTCATCAGAGAACAATTCTCTTGTGTTTAAAGGCGATGAGCGTGTGGTGGGTCT 253
Query 241 TGTGGGCAAGGTAGTAGACGATGCATTCGATGACGTCGATAGGTTTCAGAGCTCAAGTAC 300
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 254 TGTGGGCAAGGTAGTAGACGATGCATTCGATAAAGTTGATAGGTTTCAGAGCTCAAGTAC 313
Query 301 AATTGTGGCGATTGTAACACCGATTGGTGGACCACCTGGTGCGGTGGGAATCGTGCGGTT 360
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 314 TATTGTGGCGATCGTAACGCCGATTGGTGGACCACCTGGTGCGGTGGGAATTGTGCGGTT 373
Query 361 GTCGGGACCTAAGGCTGTGGAAGTTGC-AGGAAGAGTCTTTCGTTCTGCTAAGAAAAGGA 419
||| || |||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 374 GTCAGGTCCTAAGGCTGTGGAAGTTGCTA-GAAGAGTCTTTCGTTCTGCTAAGAAAACGA 432
Query 420 AGAAGAAGGACTCGGATTCGGATTCATGGCAGCCCAAGAGTCATTTCGTGGAATATGGAG 479
|||||||||| || ||||||||| | |||| ||||||||||||||| ||||| |||||||
Sbjct 433 AGAAGAAGGAGTCTGATTCGGATACGTGGCGGCCCAAGAGTCATTTTGTGGAGTATGGAG 492
Query 480 TTGTTGTTGATTCACATGGCAATGTTGTTGACGAGGTTTTAGCTGTGCCTATGTTGGCTC 539
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CTGTTGTTGATTCAAATGGCAATGTTGTTGACGAGGTTTTAGCTGTGCCTATGTTGGCTC 552
Query 540 CTCGGTCATACACTCGAGAAGATGTAGTTGAGCTCCAATGTCACGGGAGCGAAGTTTGTC 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CTCGGTCATACACTCGTGAAGATGTAGTTGAGCTCCAATGTCACGGGAGCGAAGTTTGTC 612
Query 600 TGCGGCGTGTTTTGAGGACGTGTGTTGAAGCTGGAGCACGATTAGCAGAACCAGGAGAGT 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGCGGCGTGTTTTGAGGACATGTGTTGAAGCTGGAGCACGATTAGCAGAACCAGGAGAGT 672
Query 660 TTACACTTCGTGCCTTTCTAAATGGGCGTTTAGACCTTTCGCAAGCTGAAAATGTCGAAA 719
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TCACACTTCGTGCCTTTCTAAATGGGCGTTTAGACCTTTCGCAAGCTGAAAATGTCGAAA 732
Query 720 AACTTATTTCGGCCAAGTCTTCTGCTGCTGCTGATGCTGCTTTGGAAGGGATTCAGGGAG 779
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 733 AACTTATTTCGGCCAAGTCTTCTGCTGCCGCAGATGCTGCTTTGGAAGGGATTCAGGGAG 792
Query 780 GGTTTTCATCTTTGGTCAAATCATTAAGAGCACAATGCATTGAGCTCCTCACTGAAATTG 839
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 793 GTTTTTCATCTTTGGTCAAATCCTTAAGAGCACAATGCATTGAGCTCCTCACTGAAATTG 852
Query 840 AAGCTCGTTTAGACTTTGAGGACGAGATGACGCCATTGGATATAGAGTCAGTTATTAACA 899
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 853 AAGCTCGTTTAGACTTTGAGGACGAGATGCCACCATTGGATATAGAGTCAGTTATTAACA 912
Query 900 AAATAAACAGCATGTCTCAAGACGTAGAAAGTGCATTAGAAACAGCAAACTACGACAAGC 959
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 913 AAATAACCAGCATGTCTCAAGACGTAGAAAGTGCATTAGATACAGCAAACTATGACAAGC 972
Query 960 TTCTTCGAAGCGGATTGCAGATAGCTATTGTTGGGCGTCCGAATGTTGGGAAATCAAGTC 1019
|||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 973 TTCTTCAAAGCGGATTGCAGATAGCTATTGTTGGACGTCCCAATGTCGGGAAATCAAGTC 1032
Query 1020 TTCTAAATGCCTGGAGCAAAAGTGAGAGAGCCATTGTTACAGAAGTTGCTGGAACTACTC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TTCTAAATGCCTGGAGCAAAAGTGAGAGAGCCATTGTTACAGAAGTTGCTGGAACTACTC 1092
Query 1080 GAGACGTTGTGGAAGCTAATGTTACAGTCCGTGGCGTTCCTATCACACTTCTTGACACTG 1139
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1093 GAGACGTTGTGGAAGCTAATGTTACAGTCCGCGGCGTGCCTATCACACTTCTTGACACTG 1152
Query 1140 CTGGTATCAGAGAAACCAATGACATTGTCGAAAAAATAGGAGTTGAAAGATCAGAAACAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CTGGTATCAGAGAAACCAATGACATTGTCGAAAAAATAGGAGTTGAAAGATCAGAAACAG 1212
Query 1200 CTGCTAAGGTTGCTGATGTCATAATCATGACGGTGAGTGCTGTTGAAGGCTGGACTGAAG 1259
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1213 CTGCTAAGGTTGCTGATGTCATAATCATGGCTGTGAGTGCTGTCGAAGGCTGGACTGAAG 1272
Query 1260 AAGACACTGAGCTTTTACGTAAGATCCAATCAGACAAGCCTATGATTCTGGTGATGAACA 1319
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 AAGACACTGAGCTTCTACGTAAGATCCAATCAGACAAGCCTATGATTCTGGTGATGAACA 1332
Query 1320 AAATTGATTGTGCTCCTCTTAGTAGCTGTGATCAACTAGAGGATCAGAGGAAAAAGGAAG 1379
||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1333 AAATTGACTGTGCTCCTCCTGGTAGCTGTGATCAACTAGAAGATCAGAGGAAAAAGGAAG 1392
Query 1380 AAGTTTTCCATAAGTCTGTCTTCACATCTGCTGTTACTGGTCAAGGACTTGAAGAGCTTG 1439
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 1393 AAGTTTTCCATAAGTCTGTCTTCACTTCTGCTGTAACTGGTCAAGGAATTGAAGAGCTTG 1452
Query 1440 AGGATGCAATATTGGAGATTCTTGGTCTTGATCGTGTCCCTACTGGAGGACATCAATGGA 1499
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1453 AAGATGCAATATTGGAGATTCTTGGTCTTGATCGTGTCCCCACTGGAGGACATCAATGGA 1512
Query 1500 CAGTGAATCAGAGACAATGCGAGCAATTGGTGCGGACGAAAGAAGCGCTAGCGAGGCTGA 1559
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1513 CTGTGAATCAGAGACAATGCGAGCAATTGGTGCGGACGAAAGAAGCGCTAGTGAGGCTGA 1572
Query 1560 GACAAGCGATAGAAGAAGAGATTCCGATTGATTTCTGGACGATCGAGCTGAGAGAAGCTG 1619
|| |||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1573 GAGAAGCTATCGAAGACGAGATTCCGATTGATTTCTGGACGATCGAGCTTAGAGAAGCTG 1632
Query 1620 CTTTGGCTCTTGCTCAAATCAGTGGCCAAGATGTCTCTGAAGAGGTCTTATCCTCCATTT 1679
|||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1633 CTTTATCTCTTGCTCAAATCAGTGGTCAAGATGTCTCTGAAGAGGTTTTATCTTCCATTT 1692
Query 1680 TTGCTAAGTTTTGTATCGGTAAATAAATCAGTTGCCACTTAATT 1723
||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 1693 TTGCTAAGTTTTGCATTGGTAAATAAA-CAGTTGCCACTTAATT 1735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5