BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927211
Length=2341
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78060.1 | Symbols: | Glycosyl hydrolase family protein | c... 3528 0.0
AT1G02640.1 | Symbols: BXL2, ATBXL2 | beta-xylosidase 2 | chr1:... 78.7 2e-13
> AT1G78060.1 | Symbols: | Glycosyl hydrolase family protein |
chr1:29349679-29352924 REVERSE LENGTH=2477
Length=2477
Score = 3528 bits (1910), Expect = 0.0
Identities = 2207/2351 (94%), Gaps = 18/2351 (1%)
Strand=Plus/Plus
Query 2 TTTTCCGCATTTCGAAGCCATGGCT--A-AACTGCTTCTTCTTCTCCTTCTCTTCATATT 58
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct 38 TTTTCCGCATTTCGAAGCCATGGCTAAACAACTGCTTCTTCTTCTCCTTCTCTTCATCGT 97
Query 59 TCACAGCGTCGAATCAGCTCCTCCGCCGCACTCCTGTGACCCTTCGAATCCAACCACCAA 118
||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 98 CCACGGCGTTGAATCAGCTCCTCCGCCGCACTCCTGTGACCCTTCAAATCCAACCACGAA 157
Query 119 ACTCTACCAGTTCTGCCGCACTGACCTCCCAATTAGCCAA-CGAGCGCGTGATCTCGTCT 177
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 158 ACTCTACCAGTTCTGCCGCACTGACCTCCCAATT-GGCAAGCGAGCGCGTGATCTCGTCT 216
Query 178 CGAGGCTAAACATTGACGAGAAGATATCGCAGTTGGGGAACACAGCTCCGGGGATACCAC 237
||||||||| ||| ||||||||||| |||||| ||| ||| |||||||| |||||||| |
Sbjct 217 CGAGGCTAACCATAGACGAGAAGATCTCGCAGCTGGTGAATACAGCTCCAGGGATACCGC 276
Query 238 GTCTTGGAGTTCCGGCGTACGAGTGGTGGTCGGAGGCTTTACACGGCGTAGCCTACGCCG 297
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 277 GTCTTGGAGTTCCGGCGTACGAATGGTGGTCAGAAGCTTTACACGGCGTAGCCTACGCCG 336
Query 298 GTCCAGGAATCCGGTTTAACGGAACGGTTAAAGCAGCCACTAGCTTTCCTCAAGTCATCT 357
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 337 GTCCAGGAATCCGGTTTAACGGAACGGTTAAAGCTGCTACCAGCTTTCCTCAAGTCATCT 396
Query 358 TAACCGCTGCTTCCTTCGACTCCTATGAATGGTTCCGCATTGCTCAAGTTATAGGAAAGG 417
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TGACCGCTGCTTCATTCGACTCCTATGAATGGTTCCGCATTGCTCAAGTTATAGGAAAGG 456
Query 418 AAGCAAGAGGAGTGTACAACGCAGGGCAAGCGCAAGGGA-TGACATTTTGGGCACCAAAC 476
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 457 AAGCAAGAGGAGTGTACAACGCAGGGCAAGCG-AATGGAATGACATTTTGGGCACCAAAC 515
Query 477 ATTAACATATTTAGAGATCCACGGTGGGGAAGAGGCCAAGAGACTCCCGGCGAGGATCCG 536
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 516 ATTAACATATTTAGAGATCCACGGTGGGGAAGAGGCCAAGAAACTCCCGGCGAGGATCCG 575
Query 537 CTAATGACCGGAACTTACGCGGTGGCTTACGTCAGAGGATTACAAGGCGACTCTTTCGAC 596
| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||
Sbjct 576 ATGATGACCGGAACTTACGCGGTGGCTTACGTTAGAGGACTACAAGGTGACTCTTTTGAC 635
Query 597 GGTCGGAAAACACTATCCAATCATCTCCAAGCCTCCGCTTGTTGTAAGCATTTCACGGCG 656
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 636 GGTCGGAAAACACTCTCCAATCATCTCCAAGCCTCCGCTTGTTGTAAGCATTTTACAGCG 695
Query 657 TACGATCTTGATCGTTGGAAAGGTATCACTCGCTACGTCTTTAATGCTCAGGTGAGTTTG 716
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 696 TACGATCTTGATCGTTGGAAGGGTATTACTCGCTACGTCTTCAATGCTCAGGTGAGTTTG 755
Query 717 GCTGACTTGGCGGAGACGTACCAACCACCATTCAAGAAATGCATAGAAGAAGGCCGAGCC 776
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 756 GCTGACTTGGCGGAGACGTACCAACCACCGTTCAAGAAATGCATAGAAGAAGGTCGAGCC 815
Query 777 AGTGGCATCATGTGTGCTTATAACCGAGTCAACGGCATTCCCTCTTGCGCTGATCCAAAT 836
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 816 AGTGGCATCATGTGTGCTTATAACCGAGTCAACGGCATTCCTTCTTGCGCTGACCCGAAT 875
Query 837 CTCTTGACTCGAACCGCTCGTGGGCTCTGG-CGTTTCAGCGGATACATTACTTCAGATTG 895
|| |||||||||||||||||||| | ||| | |||| ||||||||||||||||||||||
Sbjct 876 CTTTTGACTCGAACCGCTCGTGGTCAATGGGC-TTTCCGCGGATACATTACTTCAGATTG 934
Query 896 TGACGCAGTCTCAATCATCCACGATGCTCAAGGCTACGCCAAAACCCCTGAAGACGCCGT 955
||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||
Sbjct 935 TGACGCAGTCTCAATCATCTACGATGCTCAAGGCTACGCTAAAAGCCCTGAAGACGCTGT 994
Query 956 TGCTGATGTCCTCAAAGCCGGCATGGACGTAAACTGTGGATCATACTTACAAAAACATAC 1015
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 995 TGCTGATGTCCTCAAAGCTGGCATGGACGTAAACTGTGGATCATACTTACAAAAACACAC 1054
Query 1016 CAAATCAGCTCTTCAACAGAAGAAAGTGTCTGAAACAGACATTGACAGAGCTCTGCTCAA 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1055 CAAATCAGCTCTTCAACAGAAGAAAGTGTCTGAAACAGACATTGACAGAGCTCTACTCAA 1114
Query 1076 TCTTTTCGCTGTTAGGATTCGTCTCGGTCTCTTCAACGGCGATCCAAACAAACTACCTTA 1135
||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 1115 TCTTTTCTCTGTTAGGATTCGTCTCGGTCTCTTTAACGGCGATCCAACCAAATTACCTTA 1174
Query 1136 CGGAAACATTAGTCCTAACGATGTTTGTTCTCCGTCTCATCAAGCTTTAGCACTCGAAGC 1195
||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| || ||
Sbjct 1175 CGGAAACATTAGTCCTAACGAAGTTTGTTCACCGGCTCATCAAGCTTTAGCACTTGATGC 1234
Query 1196 TGCTCGTAACGGTATAGTTCTCTTGAAGAACAATCTTAAACTCCTTCCTTTCTCCAAACG 1255
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1235 TGCTCGTAATGGTATAGTTCTCTTGAAAAACAATCTTAAACTCCTTCCTTTCTCCAAACG 1294
Query 1256 CAGCGTTTCGTCTTTAGCTGTAATCGGTCCAAACGCTCACGTCGCTAAAACGCTTCTTGG 1315
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1295 CAGCGTTTCGTCTTTAGCTGTGATCGGTCCAAACGCTCACGTCGTTAAAACGCTTCTTGG 1354
Query 1316 AAACTATGCTGGTCCGCCTTGTAAGACTGTGACTCCCCTTGATGCCTTACGTAGTTATGT 1375
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1355 AAACTACGCTGGTCCGCCTTGTAAGACTGTGACTCCTCTTGATGCCTTACGTAGTTATGT 1414
Query 1376 CAAAAACGCTGTTTACCAC-AATGGTTGTGATTCCGTGGCTTGCTCTAACGCTGCGATTG 1434
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 1415 CAAAAACGCTGTTTACCACCAA-GGATGTGATTCCGTGGCTTGCTCTAACGCTGCGATTG 1473
Query 1435 ATCAAGCGGTTGCAATCGCGAGAAATGCTGATCATGTGGTTTTGATCATGGGACTAGACC 1494
|||||||||||||||| || | |||||||||||||||||||||||| |||||||||||||
Sbjct 1474 ATCAAGCGGTTGCAATTGCAAAAAATGCTGATCATGTGGTTTTGATTATGGGACTAGACC 1533
Query 1495 AGACTCAAGAGAAAGAAGATATGGACCGTGTGGACCTTAGTCTTCCCGGGAAGCAACAAG 1554
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1534 AGACTCAAGAGAAAGAAGATTTTGACCGTGTGGACCTTAGTCTTCCCGGGAAGCAACAAG 1593
Query 1555 AGCTCATTACAAGCGTTGCGAATGCTGCAAAGAAACCTGTGGTTCTTGTTCTGATATGTG 1614
| ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1594 AACTCATAACAAGCGTTGCAAATGCTGCAAAGAAACCGGTGGTCCTTGTTCTGATATGTG 1653
Query 1615 GCGGTCCTGTCGATATCTCATTTGCTACGAATAACGATAAGATCGGAAGCATTATGTGGG 1674
|||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||| ||||
Sbjct 1654 GCGGTCCTGTCGATATTTCATTTGCTGCGAATAACAATAAGATAGGAAGCATTATATGGG 1713
Query 1675 CTGGTTATCCTGGAGAAGCCGGAGGGATTGCTCTTGCTGAAATCATCTTCGGAGATCACA 1734
||||||||||||||||||| |||||||||||| || |||||||||| |||||||||||||
Sbjct 1714 CTGGTTATCCTGGAGAAGCTGGAGGGATTGCTATTTCTGAAATCATATTCGGAGATCACA 1773
Query 1735 ATCCGGGAGGAAGATTACCAGTGACTTGGTATCCTCAGAGCTTTGTGAATGTACAGATGA 1794
|||| ||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1774 ATCCCGGAGGGAGATTACCAGTGACATGGTATCCTCAGAGCTTTGTGAATATACAGATGA 1833
Query 1795 CAGACATGAGAATGCGGTCTGCAACTGGATATCCTGGAAGGACTTACAAATTCTACAAAG 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1834 CAGACATGAGAATGCGGTCTGCAACTGGATATCCTGGAAGGACTTACAAATTCTATAAAG 1893
Query 1855 GCCCTAAAGTGTTTGAGTTTGGACATGGTCTTAGCTACTCAACTTACTCATACCGGTTCA 1914
| |||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 1894 GACCTAAAGTGTATGAGTTTGGTCATGGTCTTAGCTACTCAGCTTACTCTTACCGGTTCA 1953
Query 1915 AGACTCTGGGTGCAACCAATCTCTACTTGAACCAATCTAAAGCTCAA-CTCAACTCGGAC 1973
||||||||| || |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1954 AGACTCTGGCTGAAACCAATCTCTACTTGAACCAATCTAAAGCTCAAAC-CAACTCGGAC 2012
Query 1974 TCTGTTCGGTACACTCTGGTTTCGGAAATGGGGGAAGAAGGTTGCAACATAGCCAAGACT 2033
|||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 2013 TCTGTTCGATACACTCTGGTTTCGGAAATGGGGAAAGAAGGTTGCGATGTAGCCAAGACT 2072
Query 2034 AAGGTTATTGTTACAG-TGGAGAATCAAGGTGAGATGGC-GGGAAAACATCCGGTGCTGA 2091
||||| | ||| | || |||| |||||||| |||||||| |||||| |||||||||||||
Sbjct 2073 AAGGTCACTGT-AGAGGTGGAAAATCAAGGGGAGATGGCAGGGAAA-CATCCGGTGCTGA 2130
Query 2092 TGTTTGCGAGGCACGAGAGAGGAGGAGAAGACGGGAAACGCGCAGAGAAACAACTTGTCG 2151
||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 2131 TGTTTGCGAGGCACGAGCGAGGAGGAGAAGACGGTAAACGAGCAGAGAAACAGCTTGTTG 2190
Query 2152 GGTTTAAGAGCATTGTGCTAAGTAATGGAGAGAAAGCGGAGATGGAATTTGAGATTGGTC 2211
||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||
Sbjct 2191 GGTTTAAGAGCATTGTGTTAAGCAATGGAGAGAAAGCAGAGATGGAGTTTGAGATTGGTC 2250
Query 2212 TTTGTGAGCATTTGAGCAGAGCTAATGAAGTTGGAGTTATGGTTGTTGAAGAAGGAAAAT 2271
||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct 2251 TTTGTGAGCATTTGAGCAGAGCTAATGAATTTGGAGTAATGGTTCTTGAAGAAGGAAAGT 2310
Query 2272 ATTTCTTAACCGTTGGAGATTCAGAGCTCCCTCTTATTGTTAATGTCTGAATCTGAAAA- 2330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 ATTTCTTAACCGTTGGAGATTCAGAGCTCCCTCTTATTGTTAATGTCTGAATCTGAAAAA 2370
Query 2331 CATAAACAAGA 2341
|||||||||||
Sbjct 2371 CATAAACAAGA 2381
> AT1G02640.1 | Symbols: BXL2, ATBXL2 | beta-xylosidase 2 | chr1:564205-567769
FORWARD LENGTH=2584
Length=2584
Score = 78.7 bits (42), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 209 GTTGGGGAACACAGCTCCGGGGATACCACGTCTTGGAGTTC--CGGCGTACGAGTGGTGG 266
||| |||||||| || ||| |||||||||||| ||| || || |||||||||||||
Sbjct 298 GTTAGGGAACACTGCGGCGGCGATACCACGTCTAGGA-ATCAAAGG-GTACGAGTGGTGG 355
Query 267 TCGGAGGCTTTACACGGCGT 286
||||||||||||||||||||
Sbjct 356 TCGGAGGCTTTACACGGCGT 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116214261675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5