BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927222
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 970 0.0
> AT1G78170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G22250.1);
Has 66 Blast hits to 66 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29414059-29415094
FORWARD LENGTH=920
Length=920
Score = 970 bits (525), Expect = 0.0
Identities = 657/715 (92%), Gaps = 31/715 (4%)
Strand=Plus/Plus
Query 1 GTGGAAACCAAG----ATTAAGGCAAATGGTTTCTCGACAAGAAGGAACCCTCTACTCTA 56
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 76 GTGGAAACCAAGACTAATTAAGGCTAATGGTTTCTCGACAAGAAGGAACCCTCTACTCTA 135
Query 57 GAAAGAGGGATTTCACAGTCTATGGAGAAGAGTTTCACAATTCATTCAAGAAGATCAAAC 116
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 136 GAAAGAGGGATTTCACAGTCTGTGGAGAAGAGTTTCACAATTCATTCAAGAAGAGCAAAC 195
Query 117 AAGAAGATCAATCACAGAGCACCCTGTTCAATGAACGACCAAACTCAGAGAGTATGAGAT 176
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 196 AAGAAGATCAATCACAGAGCACTCTGTTCAATGAACGACCAAAATCGGAGAGTATGAGAT 255
Query 177 CAATTACCTTTGATTTTGAACTTCATCTCCACAAC-CCTCTACCATCAGATTGGCAAACT 235
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 256 CAATTACCTTTGATTTTGAACTTCATCTCCAC-ACTCCTCTACCATCAGATTGGCAAACT 314
Query 236 AAGGGATATTCAAGAACATCTGATGATCATAGGGCATA-CACCAAAGATCCAGTGATTGT 294
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
Sbjct 315 AAGGGATATTCAAGAACATCTGATGAGCATAGGGCATATC-CCAAAGATCCAGTGATTTT 373
Query 295 TGGACAACCTAAGATGAGCCTAGACCTTGAGCTGAACCTTTCACCTTCAGGTTCACCTTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGGACAACCTAAGATGAGCCTAGACCTTGAGCTGAACCTTTCACCTTCAGGTTCACCTTC 433
Query 355 ACGAACCACAATGATCAAGAAAGATGAATACTCCTCGAAC-CACAATGAAACAGTA--A- 410
||||||||||| || | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 434 ACGAACCACAACGA--A-GAAATATGAATCCTCCTC-AATTCACAATGAAACAGTATCAT 489
Query 411 CATCAAAGGGTAAAGATTTGACGAACCCAAGTAAGAAGAG-------G--A------TAA 455
|||||||| ||||| |||||||||| ||||||||||||| | | |||
Sbjct 490 CATCAAAGATTAAAGTTTTGACGAACACAAGTAAGAAGAGCATAATTGGGACAGGACTAA 549
Query 456 GTCGATCTCCGTCCTGGCTAGCGTTTGAAGGTGGTGATGATGATGACGTTGATCACAAGG 515
||||||| || |||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 550 GTCGATCACCATCCTGGCTAGCGTTTGAAGGTGGTGATGATAACGATGTTGATCACAAGG 609
Query 516 GACAAGAGATGGTAACAACAGTTTGCATGAAATGCCACATGCTGGTTATGTTGTGCACAT 575
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 610 GGCAAGAGATGGTAACAACAGTTTGCATGAAATGCCACATGCTGGTTATGTTGTGTACAT 669
Query 576 CAACTCCTGTTTGTCCTAACTGCAAGTTCATGCACCCACATGATCACAGCTCTACAAAAC 635
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 670 CAACTCCTGTTTGTCCCAACTGCAAGTTCATGCACCCACACGATCACAGCTCTACAAAAC 729
Query 636 TGTTTAAACCATCAAATTTGCTTAGGCTCCTATGCTAGGCTCTCTCAAGGTTACT 690
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 730 TGTTTAAACCATCAAATTTGCTTAGGCTTCTATGCTAGGCTCTTTCAAGGTTACT 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5