BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927225

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78190.1 | Symbols:  | Trm112p-like protein | chr1:29418620-...   527    3e-149


> AT1G78190.1 | Symbols:  | Trm112p-like protein | chr1:29418620-29418994 
REVERSE LENGTH=375
Length=375

 Score =  527 bits (285),  Expect = 3e-149
 Identities = 346/376 (92%), Gaps = 2/376 (1%)
 Strand=Plus/Plus

Query  23   ATGAGGTTGATAGTGCACAACATGTTGTCTTGCAACATTAAAGGAGTGGTTAACAAGTTT  82
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGAGGTTGATAGTGCACAATATGTTGTCTTGCAACATTAAAGGAGTGGTCAACAAGTTT  60

Query  83   CCTCTGCGTATCGAACCCGAGAAGATAATC-GTAAAAGAGGTCGATTTCAACCCGGATTT  141
            |||||||| |||||| | |||||| ||| | ||||||||||| |||||||||||||||||
Sbjct  61   CCTCTGCGAATCGAAGCGGAGAAGGTAA-CAGTAAAAGAGGTTGATTTCAACCCGGATTT  119

Query  142  TCTCAAGCACATGTTTGCCAAAATCGATTGGAAAGCTCTAGTGGACGATGCACTTTCTAT  201
            ||||| | ||||||||||||||||||||||||| ||||||||||| | ||||| ||||||
Sbjct  120  TCTCAGGTACATGTTTGCCAAAATCGATTGGAAGGCTCTAGTGGATGGTGCACGTTCTAT  179

Query  202  GGAATACACCGAACTTCCCGATAACGCACCGGACATAAAGACGCTGGAATCTGACGAATC  261
            |||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||| |
Sbjct  180  GGAATACACCGAACTTCCCGATAACGCACCAGACACGACGACGCTGGAATCTGACGAAAC  239

Query  262  ATTCCTCGGGAAATTCCACCACGCGTTGCTCGAGCTTCATCTTGAAGAAGGCTCACTCGT  321
            ||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  240  ATTCCTAAGGAAATTCCACCACGCGTTGCTCGAGCTTCACCTTGAGGAAGGCTCACTCGT  299

Query  322  CTGCCCAGAAACCGGTAGGAAGTTTCCGGTTAACAAAGGAATCCCCAATATGCTTCTCCA  381
            ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct  300  CTGCCCAGAAACCGGTAGGAAGTTTTCGGTTAGCAAAGGAATTCCCAATATGCTTCTCCA  359

Query  382  CGAGGACGAGGTTTAA  397
            ||| || || ||||||
Sbjct  360  CGAAGATGAAGTTTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5