BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927229
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78220.1 | Symbols: GF14 PI, GRF13 | general regulatory fact... 617 5e-176
> AT1G78220.1 | Symbols: GF14 PI, GRF13 | general regulatory factor
13 | chr1:29425721-29427181 REVERSE LENGTH=738
Length=738
Score = 617 bits (334), Expect = 5e-176
Identities = 382/405 (94%), Gaps = 3/405 (1%)
Strand=Plus/Plus
Query 388 CTCATCTCATACCATC-A--ACTACTAATGTCGAATCAACTGTCTTTTTTATCAGAATGA 444
|||||||||||||||| | ||||||||||||||||||| |||| |||||| |||| |||
Sbjct 320 CTCATCTCATACCATCAACTACTACTAATGTCGAATCAATTGTCCTTTTTAACAGAGTGA 379
Query 445 AAGGAGATTATTTTCGATATATGGCAGAGTTTGGTTCTGATGCTGAACGTAAAGAAAATG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AAGGAGATTATTTTCGATATATGGCAGAGTTTGGTTCTGATGCTGAACGTAAAGAAAATG 439
Query 505 CGGATAATTCTCTGGAAGCATATAAGGTTGCAATGGAAATGGCAGAGAATAGTTTAGCAC 564
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CAGATAATTCTCTAGATGCATATAAGGTTGCAATGGAAATGGCAGAGAATAGTTTAGCAC 499
Query 565 CCACCAATATGGTTAGACTTGGATTGGCTTTAAACTTCTCGATATTCAATTATGAGATCC 624
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 500 CCACCAATATGGTTAGACTTGGATTGGCTTTAAATTTCTCGATATTCAATTATGAGATCC 559
Query 625 TTAAATCTATTGAAAGCGCATGCAAATTGGTCAAGAAAGCTTACGATGAAGCAATCGCTG 684
||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 560 ATAAATCTATTGAAAGCGCATGTAAATTGGTTAAGAAAGCTTACGATGAAGCAATCACTG 619
Query 685 AACTCGATGGCCTTGACAAGAAAAAATGTGAAGAGAGCATATACATCATAGAGATGCTTA 744
|||||||||||||||||||||| | ||| ||||||||||| || ||||||||||||||||
Sbjct 620 AACTCGATGGCCTTGACAAGAATATATGCGAAGAGAGCATGTATATCATAGAGATGCTTA 679
Query 745 AATACAATCTTTCTGCATGGACTTTAGGCGATGGTAATGGTAATA 789
|||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 680 AATACAATCTTTCTACGTGGACTTCAGGCGATGGTAATGGTAATA 724
Score = 521 bits (282), Expect = 4e-147
Identities = 312/327 (95%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 21 ATGGAGAATGAGAGAGAAAATCTTATTTACTTGGCTAAGCTCGCCTGCCTAGCTGGAAGA 80
|||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||
Sbjct 1 ATGGAGAATGAGAGAGAAAAGCTGATTTACTTGGCTAAGCTCGGTTGCCAAGCTGGAAGA 60
Query 81 TATGATGATATGATGAAATCGATGAGAAAAGTATGTGAGCATGATATAGAGCTAAGTGAA 140
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TATGATGATGTGATGAAATCGATGAGAAAAGTATGTGAGCTTGATATAGAGCTAAGTGAA 120
Query 141 GAGGAAAGAGACCTACTAACAACTGGGTACAAGAATGTCATGGAGACTAAGAGAGCTTCA 200
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||
Sbjct 121 GAGGAAAGAGACCTACTAACAACTGGATACAAGAATGTCATGGAGGCTAAGAGAGTTTCA 180
Query 201 TTGAGAGTAATATCATCTATTGAAAAATTGGAAGACTCGAAAGGAAACGACCAAAATGTT 260
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TTGAGAGTAATATCATCCATTGAAAAAATGGAAGACTCGAAAGGAAACGACCAAAATGTG 240
Query 261 AAATTGATAAAAGGACAACAAGAAATGGTTAAATATGAGTTTTTCGATGTTTGTAATGAC 320
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 AAACTGATAAAAGGACAACAAGAAATGGTTAAATATGAGTTTTTCAATGTTTGTAATGAC 300
Query 321 ATTTTGTCTCTCATTGATTCTCATCTC 347
|||||||||||||||||||||||||||
Sbjct 301 ATTTTGTCTCTCATTGATTCTCATCTC 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5