BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927234
Length=2750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78280.1 | Symbols: | transferases, transferring glycosyl g... 2615 0.0
> AT1G78280.1 | Symbols: | transferases, transferring glycosyl
groups | chr1:29452555-29457373 FORWARD LENGTH=3355
Length=3355
Score = 2615 bits (1416), Expect = 0.0
Identities = 1584/1666 (95%), Gaps = 8/1666 (0%)
Strand=Plus/Plus
Query 2 TTCCATAGAAGCTTGTAGCCAATGACGACGTTAGGACAAAGAGATCGCCGACCAGAGGCT 61
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 248 TTCCATTGAAGCTTATAGCCAATGACGACGTTAGGACAAAGAGATCGCCGACCAGATGCT 307
Query 62 CTCGGTAGTCTCAGTGTTCTACCAGATGAGACCATCTGTGTTCTTCTCGAATACCTTGCT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CTCGGTAGTCTCAGTGTTCTACCAGATGAGACCATCTGTGTTCTTCTCGAATACCTTGCT 367
Query 122 CCTCGAGATATTGCTAACCTCGCTTGTGTCAGCAGTGTCATGTATATTCTATGTAATGAA 181
|| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 368 CCCCGAGATATTGCTCACCTCGCTTGTGTCAGCAGTGTGATGTATATTCTATGTAATGAA 427
Query 182 GAACCATTATGGATGAGCTTATGTCTCAGAAGAGCAAAAGGTCCTCTTGAATACAAAGGT 241
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 428 GAACCATTGTGGATGAGTTTGTGTCTCAGAAGAGCAAAAGGTCCTCTTGAATACAAAGGT 487
Query 242 TCTTGGaaaaaaaCCACATTGCATCTAGAAGGAGTTGCTCAAGAAAATGTCGCATATAGA 301
|||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 488 TCTTGGAAAAAAACAACATTGCATCTAGAAGGAGTTACTCAAGAAAATGACGCATACAGA 547
Query 302 AAACCTTTTCATTTTGATGGATTCATGTCGCTGTACTTGTATAAACGATTCTATAGGTGT 361
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 548 AAATGTTTTCATTTTGATGGATTCATGTCGTTGTACTTGTATAAACGATTCTATAGGTGT 607
Query 362 AATACATCTCTTGACGGGTTCTCTTTTGATAATGGGAATGTGGAACGTAGGAGAGATATC 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 608 AATACATCTCTTGACGGGTTCTCTTTTGATAATGGGAATGTGGAACGTAGGAGAAATATC 667
Query 422 TCCTTGGATGAGTTTTCCAAGGAATATGACGCCAAGAAACCTGTTTTGCTTTCTGGACTT 481
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 668 TCCTTGGATGAGTTTTCTAAGGAATACGACGCCAAGAAACCTGTTTTGCTTTCTGGCCTT 727
Query 482 GCTGATTCTTGGCCAGCAAGTACA-ACGTGGACAATCGACCAACTCTCAGAGAAATATGG 540
||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||
Sbjct 728 GCTGATTCTTGGCCAGCCAGTA-ATACGTGGACTATCGACCAACTCTCAGAGAAATATGG 786
Query 541 TGAAGTCCCTTTTAGAATATCTCAGAGGAGTCCCAACAAAATTTCTATGAACTTCAAGGA 600
||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 787 TGAAGTCCCGTTTAGAATATCTCAGAGGAGCCCCAACAAAATTTCCATGAAGTTCAAGGA 846
Query 601 TTACATCTCGTATATGAAAACCCAGCGGGATGAAGATCCTCTATACGTTTTCGATGACAA 660
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 847 TTACATCGCATATATGAAAACTCAGCGGGATGAAGATCCTCTATACGTTTTCGATGACAA 906
Query 661 GTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTTCAAGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTTCAAGA 966
Query 721 AGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCGTACAGATGGCTTATAGTCGG 780
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 967 AGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCATACAGATGGCTTATAGTTGG 1026
Query 781 TCCGGAGAGGTCTGGTGCATCTTGGCATGTCGATCCAGCTCTTACCAGCGCCTGGAACAC 840
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1027 TCCGGAGAGGTCTGGTGCATCTTGGCATGTTGACCCAGCTCTTACCAGCGCCTGGAACAC 1086
Query 841 CCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTTTAGGTGT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1087 CCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTCTAGGTGT 1146
Query 901 TACAGTTCATGTAAATGAAGATGACGGTGATGTCAGCATCGACACCCCCTCATCTCTGCA 960
|||||| ||||| ||||||||||| |||||||||||||| || || ||||||||||||||
Sbjct 1147 TACAGTCCATGTCAATGAAGATGATGGTGATGTCAGCATTGATACACCCTCATCTCTGCA 1206
Query 961 GTGGTGGCTAGACTATTATCCCCTCCTTGCGGACGAAGACAAACCAATTGAGTGCACACT 1020
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1207 GTGGTGGCTAGACTATTATCCCCTTCTTGCGGACGAAGACAAACCGATTGAGTGCACACT 1266
Query 1021 ACTAGCTGGTGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAATCTTGA 1080
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 ACTACCTGGCGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAATCTTGA 1326
Query 1081 ACCAACAGTAGCTGTTACCCAGAATTTTGTGAACAAAGAAAATTTTGGGTTCGTGTGTTT 1140
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1327 ACCAACAGTGGCTGTTACCCAGAATTTTGTGAACAAAGAAAACTTTGGGTTCGTGTGCTT 1386
Query 1141 GGATATGGCGCCTGGTTACCATCACAAAGGGGTTTGCCGTGCTGGGCTTCTTGCTCTCGA 1200
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1387 GGATATGGCGCCTGGTTACCATCACAAAGGAGTTTGCCGTGCTGGGCTTCTTGCTCTTGA 1446
Query 1201 TGATGAAAATTCTGAAGATTTGGAA-AATGATACACATGATGAGGACGACAATACTTTAA 1259
||||||||||||||||||||||||| || || ||||| ||||| || || |||||||| |
Sbjct 1447 TGATGAAAATTCTGAAGATTTGGAAGAA-GAAACACACGATGAAGAAGATAATACTTTGA 1505
Query 1260 GCTACTCAGACCTTACCAGGAAAGAGAAGAGGATACGGATGAATGGAGGGGGAGAGACTG 1319
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1506 GCTATTCAGACCTTACCAGGAAAGAGAAGAGGACACGGATGAATGGAGGTGGAGAGACTG 1565
Query 1320 AAAACCAAGAAGAGGATGCT-AATGGAGTATTAAAGAGATACAATATGTGGAAAAATGGA 1378
|||||| |||||||||| | |||||||||| |||||||| ||||||||||| ||||||
Sbjct 1566 AAAACCGCGAAGAGGATG-TGAATGGAGTATCGAAGAGATATAATATGTGGAAGAATGGA 1624
Query 1379 TTCTCGTATAATATTGATTTCCTGGCTTCATTTCTTGATAAAGAAAGAGACCATTATAAT 1438
|| || ||| |||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1625 TTTTCATATGATATCGATTTCCTCGCTTCATTTCTTGATAAAGAAAGAGATCATTACAAT 1684
Query 1439 TTCCCATGGTCAATGGGGAACTCTGTAGGTCAACGAGAAATGAGAGCCTGGCTATCCAAG 1498
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1685 TTCCCATGGTCAATGGGGAACTCTGTAGGCCAACGAGAAATGAGAGCCTGGCTATCCAAG 1744
Query 1499 CTTTGGGCTT-TGAAGCCTGAGATGAGAGGATTAATATGGAAGGGAGCATGCATTGCTTT 1557
||||||| || |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1745 CTTTGGG-TTCTGAAGCCTGAGATGAGAGAACTAATATGGAAGGGAGCATGCATTGCTTT 1803
Query 1558 AAATGCTGAGAAATGGTTGCGATGCCTAGAGGAAGTATGTACTTTCCACAACTTGCCGTT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 AAATGCTGAGAAATGGTTGCGATGCCTAGAGGAAGTATGTACTTTCCACAACTTGCCGTT 1863
Query 1618 GGTTACCGAAGATGAAAAGCTTCCAGTTGGAACTGGCAGCAACCCT 1663
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 GGTTACCGAAGATGAAAAGCTTCCAGTTGGAACTGGCAGCAACCCT 1909
Score = 1541 bits (834), Expect = 0.0
Identities = 937/987 (95%), Gaps = 5/987 (1%)
Strand=Plus/Plus
Query 1664 CTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTGAA 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 CTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTGAA 2050
Query 1724 GTTCTAGAAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCCTGGGAT 1783
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2051 GTTCTAGCAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCTTGGGAT 2110
Query 1784 GGCAAGAGAATCCCAGACATTATCTCTAGCTCCAATTTCGATTTTGATGCATCCATGTTG 1843
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2111 GGCAAGAGAATCCCAGATATTATCTCTAGCTCCAGTTTCGATTTTGATGCATCCATGTTA 2170
Query 1844 AACAGCGAATTCCCATTTGGTATTTGGAACAAAACACTACGTGAACATAGAAACCAGGGG 1903
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 2171 AACAGCGAATTCCCATTTGGTATTTGGAATAAAACGCTACGTGAACATAAAAACCAGGGG 2230
Query 1904 AAGCCAGCACCCGATTCTTTTGGTTCATTGAGTTCACATGTTTGGCCGTATATTATAACC 1963
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2231 AAGCCAGCACCCGATTCTTTTGGTTCATTGAGTTCACATGTTTGGCCATATATTATAACC 2290
Query 1964 AAAAGATGCAAAGGGAAGATTTTCGCCCAACTAAGAGATGATCTAACGTGGAACGATGCT 2023
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 2291 AAAAGATGCAAAGGGAAGATTTTTGCCCAACTAAGAGATGATCTAACCTGGAACGACGCT 2350
Query 2024 CAGAACTTGGCTTCCTTTCTGGGACAACAACTACGCAACCTTCATCTACTTCCATATCCA 2083
|||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2351 CAGAACCTGGCTTTCTTTCTCGGACAACAACTACGCAACCTTCATCTACTTCCATATCCA 2410
Query 2084 CCAGTCACACGTCCGGAGTTGTTGAATATGAATGCTGTTCATGAGGAGTTGAACATTCCA 2143
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2411 CCGGTCACACGTCCGGAGTTGTTGAATGTGAATGCTGTTCATGAGGAGTTGAACATTCCA 2470
Query 2144 GCAGAATGGAAAGTTTTCGTCGATGCTCTGTGCCAAAAGAAGAAAGACGTCACTAGTCGT 2203
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2471 GCAGAATGGAAAGTTTTTGTCGATGCTCTGTGCCAAAAGAAGAAGGACGTCACTAGTCGT 2530
Query 2204 CTGGAAAACTGGGGAAATCCTATACCTCGTGCTCTGATGACCAAAATAGACGAATACATT 2263
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 2531 CTGGAAAACTGGGGAAATCCGATACCTCGGGCTCTGATGACCAAGATAGACGAATACATT 2590
Query 2264 CCTGATGACTTTTTTGTAGATTTACTCAACGTTTTCAAGGACCCAAATGGTGGAGACGAA 2323
|| |||||||||||||||||||||||| |||| |||||||| ||||||||||||| |||
Sbjct 2591 CCCGATGACTTTTTTGTAGATTTACTCCACGTCTTCAAGGAGACAAATGGTGGAGATGAA 2650
Query 2324 AGCAAACCCTGCACCTGGATACACTCAGACGTCATGGATGACAACATTCACATGGAACCA 2383
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2651 ATCAAGCCCTGCACCTGGATACACTCAGACGTAATGGATGACAACATTCACATGGAACCA 2710
Query 2384 TATTCAGATGATTCAGTTGATGGTCAACACAATTTATGGCGTCCCAGTCATATTCTCGAC 2443
|| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 2711 TACGCAGATGATTCAGTTGATGGTCAACACAACTCATGGCGTCCCAGTCATATTCTTGAC 2770
Query 2444 TTTAGCGATTTATCCATAGGAGATCCCATCTGCGACTTGATACCAATATACTTGGACGTC 2503
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2771 TTCAGCGATTTAACCATAGGAGATCCCATCTGCGACTTGATACCAATATACTTGGACGTC 2830
Query 2504 TTTAGAGGAGACGCTGATCTT-TTCAAGAAGCTTCTAGAAAGTTACGGACTTCCATTAAT 2562
||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||
Sbjct 2831 TTTAGAGGAGACGCTGATCTTCTT-AAGAAGCTTCTAGAAAATTATGGACTTCCATTAAT 2889
Query 2563 CAGAAGTAGATCCCCGGAGGAGAACGGAACAACAAAAACAACAGACAGTACGAGGAAGAA 2622
|||||||||||| | || |||||||||||||||||||| |||||||||||||||||||
Sbjct 2890 CAGAAGTAGATCTTC--AG-AGAACGGAACAACAAAAACAGCAGACAGTACGAGGAAGAA 2946
Query 2623 AGTATTGTGTCCTTCCTACCGTACAAT 2649
|||||||| ||| ||||||||||||||
Sbjct 2947 AGTATTGTCTCCATCCTACCGTACAAT 2973
Score = 137 bits (74), Expect = 5e-31
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 2650 TATTTGGGACGAACTTCGTACAGCTGAATCATGGGAACAAGTTGAGCAAACTGTTTGGAG 2709
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 3022 TATTTGGGACGAACTTCGGACTGCTGAATCATGGGAACAAGTTGAGCAAACTGTTTGGAG 3081
Query 2710 TCTACTTAACACCTACTAAT 2729
||||||||||||||||||||
Sbjct 3082 TCTACTTAACACCTACTAAT 3101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136604585789
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5