BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927239
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78320.1 | Symbols: ATGSTU23, GSTU23 | glutathione S-transfe... 647 0.0
AT1G78380.1 | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-t... 279 1e-74
> AT1G78320.1 | Symbols: ATGSTU23, GSTU23 | glutathione S-transferase
TAU 23 | chr1:29467437-29468374 REVERSE LENGTH=823
Length=823
Score = 647 bits (350), Expect = 0.0
Identities = 416/447 (93%), Gaps = 7/447 (2%)
Strand=Plus/Plus
Query 7 CACCGCCAGCTAAAAATGGCGGAAGAGATTATCCTATTAGATTACTGGGCGAGTATGTTC 66
||||| ||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |
Sbjct 2 CACCGACAGCTAAAAATGGAGGAAGAGATTATCCTATTGGATTATTGGGCGAGTATGTAC 61
Query 67 GGGATGAGGACAAGGATTGCTTTGGAGGAGAAAGGAGTGAAATATGAGTATAGAGAAGAA 126
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 62 GGGATGAGGACAAGGATTGCTTTGGAGGAGAAAAAAGTGAAATATGAGTATAGAGAAGAA 121
Query 127 GATCTGAGTAACAAAAGCCCTTTACTTCTTGAGATGAACCCTATTCACAAGAAGATTCCG 186
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 122 GATCTGAGTAACAAAAGCCCTTTACTTCTTCAGATGAACCCTATTCACAAGAAGATTCCG 181
Query 187 GTTTTGATCCATAAAGGTAAACCGATCTGCGAATCGCTAATCCAAGTTCAGTATATCGAC 246
||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 182 GTTTTAATTCATGAAGGTAAACCGATCTGCGAATCGATAATCCAAGTTCAGTATATCGAC 241
Query 247 GAGCTCTGGCCCGACACAAACCCGATTCATCCTTCGGATCCTTACCAGAGAGCTCAAGCT 306
||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 242 GAGCTTTGGCCTGACACAAACCCGATTCTTCCTTCAGATCCTTACCAGAGAGCTCAAGCT 301
Query 307 AGATTTTGGGCAGATTACATTGATAAGAAGACATACGTACCATGCAAGGCTTTATGGTCA 366
|||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||
Sbjct 302 AGATTTTGGGCAGATTACATCGACAAGAAGACATACGTGCCATGCAAGGCATTATGGTCA 361
Query 367 GAAACAGGGGAGAAACAAGAGGCAGCGAAGATGGAGTTCATTGAAGTACTCAAGAGTCAA 426
||| |||||||||||||||||||||||||||| ||||| || ||||||||||||| ||
Sbjct 362 GAATCAGGGGAGAAACAAGAGGCAGCGAAGATAGAGTTTATAGAAGTACTCAAGA--CA- 418
Query 427 GACACTTGATTCAGAGCTTGGAGACAA 453
| ||||||||||||||||||||||
Sbjct 419 --C--TTGATTCAGAGCTTGGAGACAA 441
> AT1G78380.1 | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase
TAU 19 | chr1:29486413-29487906 REVERSE LENGTH=993
Length=993
Score = 279 bits (151), Expect = 1e-74
Identities = 356/450 (79%), Gaps = 33/450 (7%)
Strand=Plus/Plus
Query 17 TAAAAATGGCGGAA-GAGATTA-TCCTATTAGATTACTGGGCGAGTATGTTCGGGATGAG 74
||| |||||| ||| ||| | | || | || |||| |||| |||||||||||||||||||
Sbjct 83 TAACAATGGC-GAACGAGGTGATTCTTCTT-GATTTCTGGCCGAGTATGTTCGGGATGAG 140
Query 75 GACAAGGATTGCTTTGGAGG-AGAAAGGAGT-GAAATATGAGTATAGAGAAGAAGATCTG 132
||||||||| || ||| ||| ||||||| || ||| | |||||| ||||||||||||||
Sbjct 141 GACAAGGATCGCATTG-AGGGAGAAAGGTGTTGAATT-TGAGTACAGAGAAGAAGATCTA 198
Query 133 AGTAACAAAAGCCCTTTACTTCTTGAGATGAACCCTATTCACAAGAAGATTCCGGTTTTG 192
|| ||||| || ||||| ||||| ||||||| || ||||||||||||||||| ||| |
Sbjct 199 AGGAACAAGAGTCCTTTGCTTCTCCAGATGAATCCGATTCACAAGAAGATTCCTGTTCTC 258
Query 193 ATCCATAAAGGTAAACCGATCTG-CGAATCGCTAATCCAAGTTCAGTATATCGACGAGCT 251
||||| || ||||||||| | | |||||| | ||||| |||||||| || |||||| |
Sbjct 259 ATCCACAATGGTAAACCGGT-TAACGAATCTATCATCCAGGTTCAGTACATTGACGAGGT 317
Query 252 CTGGCC-CGACACA-AACCCGATTCATCCTTCGGATCCTTACCAGAGAGCTCAAGCTAGA 309
|||| | | ||| | ||||| || | |||||| |||||||||| |||||||||||||||
Sbjct 318 CTGGTCTC-ACA-AGAACCCTATCCTTCCTTCTGATCCTTACCTGAGAGCTCAAGCTAGG 375
Query 310 TTTTGGGCAGATTACATTGATAAGAAGACA-TACG-TAC-CAT-GCAAGGCTTTATGGTC 365
|| ||||| |||| |||||| |||||| | || | | | || | |||| | | || |
Sbjct 376 TTCTGGGCTGATTTCATTGACAAGAAG-CTGTATGATGCTCAGAGGAAGG-TGTG-GG-C 431
Query 366 AGA-AACAGGG-GAGAAACAAGAGGCAGCGAAGATGGAGTTCATTGAAGTACTCAAGAGT 423
|| || |||| ||| |||||||||||| ||||| ||| |||||||| | | | | |
Sbjct 432 -GACAA-AGGGTGAGGAACAAGAGGCAGGGAAGAAGGATTTCATTGA-G-A-T-AC---T 482
Query 424 CAAGACACTTGATTCAGAGCTTGGAGACAA 453
|||||| ||||| || ||||||||||||||
Sbjct 483 CAAGACTCTTGAATCTGAGCTTGGAGACAA 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21665399819
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5