BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927248 Length=408 Score E Sequences producing significant alignments: (Bits) Value AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoi... 608 1e-173 > AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoid dioxygenase 9 | chr1:29490895-29492875 REVERSE LENGTH=1981 Length=1981 Score = 608 bits (329), Expect = 1e-173 Identities = 367/386 (95%), Gaps = 0/386 (0%) Strand=Plus/Plus Query 1 CAAGTTAATCTCGAAGCCGGTATGGTAAACCGGAATTTATTAGGTaaaaaaaCACGGTTT 60 ||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |||| | Sbjct 1595 CAAGTTAATCTCGAAGCTGGTATGGTCAACCGGAATTTATTAGGTAGAAAAACCCGGTAT 1654 Query 61 GCTTATTTGGCTTTAACCGAACCGTGGCCTAAAGTGTCCGGTTTCGTTAAAGTGGACTTA 120 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1655 GCTTATCTGGCTTTAACCGAACCGTGGCCTAAAGTGTCCGGTTTCGCTAAAGTGGACTTA 1714 Query 121 TCGACCGGAGATATTCAAAAGTATATATATGGAGATGGGAAATACGGAGGAGAGCCTCTG 180 ||||||||||| |||| ||||||||| || ||||| |||||||||||||||||||||||| Sbjct 1715 TCGACCGGAGAGATTCGAAAGTATATTTACGGAGAGGGGAAATACGGAGGAGAGCCTCTG 1774 Query 181 TTTCTGCCTTCCGGTGACGGTGAAGAAGACGGTGGTTACATTATGGTGTTCGTTCACGAC 240 ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct 1775 TTTCTACCTTCCGGTGACGGAGAAGAAGACGGAGGTTACATAATGGTGTTCGTTCACGAC 1834 Query 241 GAGGAGAAGGTGAAATCGGAACTCCAAATCATAAACGCCGTTAATATGAAGCTTGAAGCT 300 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1835 GAGGAGAAGGTGAAATCGGAACTCCAACTCATAAACGCCGTTAATATGAAGCTTGAAGCT 1894 Query 301 ACCGTTACGCTTCCGTCGAGAGTGCCTTATGGTTTCCACGGAACGTTCATCAGTAAGGAA 360 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1895 ACCGTAACGCTTCCGTCGAGAGTGCCTTACGGTTTCCACGGAACGTTCATCAGTAAGGAA 1954 Query 361 GATTTATCGAAGCAAGCTTTGTGTTA 386 |||||||||||||||||||||||||| Sbjct 1955 GATTTATCGAAGCAAGCTTTGTGTTA 1980 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19302815616 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5