BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927248

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoi...   608    1e-173


> AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoid 
dioxygenase 9 | chr1:29490895-29492875 REVERSE LENGTH=1981
Length=1981

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 367/386 (95%), Gaps = 0/386 (0%)
 Strand=Plus/Plus

Query  1     CAAGTTAATCTCGAAGCCGGTATGGTAAACCGGAATTTATTAGGTaaaaaaaCACGGTTT  60
             ||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |||| |
Sbjct  1595  CAAGTTAATCTCGAAGCTGGTATGGTCAACCGGAATTTATTAGGTAGAAAAACCCGGTAT  1654

Query  61    GCTTATTTGGCTTTAACCGAACCGTGGCCTAAAGTGTCCGGTTTCGTTAAAGTGGACTTA  120
             |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1655  GCTTATCTGGCTTTAACCGAACCGTGGCCTAAAGTGTCCGGTTTCGCTAAAGTGGACTTA  1714

Query  121   TCGACCGGAGATATTCAAAAGTATATATATGGAGATGGGAAATACGGAGGAGAGCCTCTG  180
             ||||||||||| |||| ||||||||| || ||||| ||||||||||||||||||||||||
Sbjct  1715  TCGACCGGAGAGATTCGAAAGTATATTTACGGAGAGGGGAAATACGGAGGAGAGCCTCTG  1774

Query  181   TTTCTGCCTTCCGGTGACGGTGAAGAAGACGGTGGTTACATTATGGTGTTCGTTCACGAC  240
             ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct  1775  TTTCTACCTTCCGGTGACGGAGAAGAAGACGGAGGTTACATAATGGTGTTCGTTCACGAC  1834

Query  241   GAGGAGAAGGTGAAATCGGAACTCCAAATCATAAACGCCGTTAATATGAAGCTTGAAGCT  300
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1835  GAGGAGAAGGTGAAATCGGAACTCCAACTCATAAACGCCGTTAATATGAAGCTTGAAGCT  1894

Query  301   ACCGTTACGCTTCCGTCGAGAGTGCCTTATGGTTTCCACGGAACGTTCATCAGTAAGGAA  360
             ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1895  ACCGTAACGCTTCCGTCGAGAGTGCCTTACGGTTTCCACGGAACGTTCATCAGTAAGGAA  1954

Query  361   GATTTATCGAAGCAAGCTTTGTGTTA  386
             ||||||||||||||||||||||||||
Sbjct  1955  GATTTATCGAAGCAAGCTTTGTGTTA  1980



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5