BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927252
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78420.1 | Symbols: | RING/U-box superfamily protein | chr1... 1910 0.0
AT1G17145.1 | Symbols: | RING/U-box superfamily protein | chr1... 398 9e-110
> AT1G78420.1 | Symbols: | RING/U-box superfamily protein | chr1:29504533-29507486
FORWARD LENGTH=1923
Length=1923
Score = 1910 bits (1034), Expect = 0.0
Identities = 1188/1261 (94%), Gaps = 16/1261 (1%)
Strand=Plus/Plus
Query 1 GAAAGGTTAAAACTTTGGTGATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAG 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GAAAGGTTAAAACTTT-GTGATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAG 543
Query 61 AAAGGTATACAAAGCCACAAGGTTTGTATGTGAATAAAGATGTTGACGTTAAAAAGCTCA 120
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 544 AAAGGTATACAAAGCCTCAAGGTTTGTATGTGAATAAAGATGTCGACGTTAAAAAGCTCA 603
Query 121 GAAAACTGATTGTAGAGTCTAAGCTTGCTCCTTGCTATCCCGGAGACGATGAAAGCTGCC 180
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 604 GAAAACTGATTGTGGAGTCTAAGCTTGCTCCTTGCTATCCTGGAGACGATGAAAGCTGTC 663
Query 181 ACGATCTTGAAGAATGCCCCATTTGTTTCCTGTATTATCCTAGCCTCAATAGATCAAGAT 240
| |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||
Sbjct 664 ATGATCTTGAAGAATGTCCAATTTGTTTTCTGTACTATCCTAGCCTCAATAGATCAAGAT 723
Query 241 GTTGCATGAAAAGCATCTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTC 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GTTGCATGAAAAGCATTTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTC 783
Query 301 GGCCTACTCAGTGCCCATTTTGTAAAACTCCCAATTATGCTGTCGAGTATCGTGGCGTAA 360
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |
Sbjct 784 GGCCTACTCAGTGCCCTTTTTGTAAAACTCCCAACTATGCTGTCGAGTATCGTGGAGTCA 843
Query 361 AGACAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGTCAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAA 903
Query 421 TAAGGATGAGGCAGAAGGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAAT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TAAGGATGAGGCAGAAAGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAAT 963
Query 481 CATGGTCCTCTAGCACAAGTGCAATGACTGGCGAGATGGAATATGGTTCAGCTTCAGCCA 540
|||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 964 CATGTTCCTCTAGCACAAGCGCAATGACTGGCGAGATGGAATATGGTTCAACTTCAGCCA 1023
Query 541 TATCTTATAATTCCCCCATGGAAGACGGCGAAATTGCTCCATCACAGAACACAGCAGTGG 600
|||||||||| |||| |||||| ||||| |||||||||||||| |||||| || | || |
Sbjct 1024 TATCTTATAACTCCCTCATGGATGACGGGGAAATTGCTCCATCGCAGAACGCATCTGTTG 1083
Query 601 TTAGACAGCATTCCCGTCCTCGAGGAAACAGGGATGATGAGGTTGACGTTGACCTTGAAG 660
||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1084 TTAGACAACATTCCCGCCCGCGAGGAAACAGGGAGGATGAGGTTGACGTTGACCTTGAGG 1143
Query 661 AATTGATGATTATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATT 720
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 AATTGATGGTCATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATT 1203
Query 721 CAGCTTCTGGGGAAATGACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTT 780
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 CAGCTTCAGGGGAAATTACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTT 1263
Query 781 CTTCACCACCACGAATGGCTCCAATCGTTGAACCAGCAACACTGTCCTCATCAGCTGGTG 840
|||||||||||||| || |||||||||| ||||||||||||| ||| |||||| ||||||
Sbjct 1264 CTTCACCACCACGAGTGACTCCAATCGTAGAACCAGCAACACCGTCTTCATCATCTGGTG 1323
Query 841 GACTTGCTTGTGCAATCGCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAATC 900
| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1324 GGCTTTCTTGTGCAATCTCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAGTC 1383
Query 901 ACAATCACAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCTGGAAATTGTGACA 960
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1384 ACAATCATAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCCGGAAATTGTGACA 1443
Query 961 GTTACTACGACATAGAACAAGAGGTAGATGACATAGACAACCATCATCATCGTCATCATC 1020
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1444 GTTACTACGACATAGAACAAGAGGTAGATGGCATAGACAACCATCATCATCATCGTCATC 1503
Query 1021 ATTACCATAACAACACCGAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTT 1080
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATTAC------------GAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTT 1551
Query 1081 ACATGACCGGCGAGAGCTTCCACAACTTTCTTCCTCCTCCTCCACCTCTGGTCATTGTTC 1140
||||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1552 ACATGACAGGCGAGGGCTTCCACAACTTTC--C-TCCTCCTCCACCTCTGGTCATTGTTC 1608
Query 1141 CAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 CAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATG 1668
Query 1201 CCACGACGACAAGTGCACCAACTGAAGTTACTTGGCAATAAATAGGATAATAATGGAAAC 1260
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1669 CCACGACGACATGTGCACCAACTGAAGTTACCTGGCAATAAATAGGATAATAATGGAAAC 1728
Query 1261 T 1261
|
Sbjct 1729 T 1729
> AT1G17145.1 | Symbols: | RING/U-box superfamily protein | chr1:5860119-5862682
REVERSE LENGTH=1422
Length=1422
Score = 398 bits (215), Expect = 9e-110
Identities = 406/494 (82%), Gaps = 30/494 (6%)
Strand=Plus/Plus
Query 21 ATGGGTAATAAGTTGGGAAGGAAGAGGCAAG-TGGTGGAAGAAAGGTATACAAAG-C-C- 76
|||||||||||| ||||||||||||| | || | ||||| ||||| || |||||| | |
Sbjct 183 ATGGGTAATAAGCTGGGAAGGAAGAGAC-AGATTGTGGACGAAAGATACACAAAGCCACA 241
Query 77 ACAAGGTTTGTATGTGAATAAAGATGTTGACGTTAAAAAGC-TCAGAAAACTGAT-TGTA 134
||||||||| || ||| |||||||||||| ||||||||| | || ||||| || | ||
Sbjct 242 ACAAGGTTTATACATGAGCAAAGATGTTGACATTAAAAAGCTTAAG-AAACTCATCT-TA 299
Query 135 GAGTCTAAGCTTGCTCCTTGCTATCCCGGAGACGATGAAA------GCTGCCA-C--GAT 185
|||||||||||||||||||| ||||| || || |||| || ||| | |||
Sbjct 300 GAGTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCCCCTCCTCCCATCATGAT 359
Query 186 CTTGAAGAATGCCCCATTTG-TTTCCTGTATTATCCTAGCCTCAATAGATCAAGATGTTG 244
||||||||||| || ||||| ||| ||||||||||| || || ||||| |||||||||||
Sbjct 360 CTTGAAGAATGTCCTATTTGCTTT-CTGTATTATCCGAGTCTTAATAGGTCAAGATGTTG 418
Query 245 CATGAAAAGCATCTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTCGGCC 304
||||||||||| |||||||| || ||| ||| ||||||| |||||||||||||| ||
Sbjct 419 TATGAAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTCAACC 478
Query 305 TACTCAGTGCCCATTTTGTAAAAC-TCCCAATTATGCTGTCGAGTATCGTGG-CGTAAAG 362
|||||| ||||| ||||| ||||| | ||||||||||||||||||||||||| | |||
Sbjct 479 TACTCAATGCCCTTTTTGCAAAACAT-CCAATTATGCTGTCGAGTATCGTGGAGGGAAA- 536
Query 363 AC-AAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAAT 421
|| ||| ||||| ||| || |||||||| |||||||||| || || ||||||||||||||
Sbjct 537 ACTAAA-GAGGAGAAGAGCTTTGAACAAATTGAAGAGCAGCGAGTTATAGAAGCCAAAAT 595
Query 422 AAGGATGAGGCAGAAGGAAAT-GCAGGATGATGAAGAGAA-AATGCAGAAACGTCTTGAA 479
||||||||||||||||||| | | || |||||||||| || ||||||||||||||| ||
Sbjct 596 AAGGATGAGGCAGAAGGAAGTTGAAG-ATGATGAAGA-AAGAATGCAGAAACGTCTGGAG 653
Query 480 TCATGGTCCTCTAG 493
|||| || |||||
Sbjct 654 TCATATTCTTCTAG 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5