BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927252 Length=1261 Score E Sequences producing significant alignments: (Bits) Value AT1G78420.1 | Symbols: | RING/U-box superfamily protein | chr1... 1910 0.0 AT1G17145.1 | Symbols: | RING/U-box superfamily protein | chr1... 398 9e-110 > AT1G78420.1 | Symbols: | RING/U-box superfamily protein | chr1:29504533-29507486 FORWARD LENGTH=1923 Length=1923 Score = 1910 bits (1034), Expect = 0.0 Identities = 1188/1261 (94%), Gaps = 16/1261 (1%) Strand=Plus/Plus Query 1 GAAAGGTTAAAACTTTGGTGATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAG 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 GAAAGGTTAAAACTTT-GTGATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAG 543 Query 61 AAAGGTATACAAAGCCACAAGGTTTGTATGTGAATAAAGATGTTGACGTTAAAAAGCTCA 120 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 544 AAAGGTATACAAAGCCTCAAGGTTTGTATGTGAATAAAGATGTCGACGTTAAAAAGCTCA 603 Query 121 GAAAACTGATTGTAGAGTCTAAGCTTGCTCCTTGCTATCCCGGAGACGATGAAAGCTGCC 180 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 604 GAAAACTGATTGTGGAGTCTAAGCTTGCTCCTTGCTATCCTGGAGACGATGAAAGCTGTC 663 Query 181 ACGATCTTGAAGAATGCCCCATTTGTTTCCTGTATTATCCTAGCCTCAATAGATCAAGAT 240 | |||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||| Sbjct 664 ATGATCTTGAAGAATGTCCAATTTGTTTTCTGTACTATCCTAGCCTCAATAGATCAAGAT 723 Query 241 GTTGCATGAAAAGCATCTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTC 300 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 724 GTTGCATGAAAAGCATTTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTC 783 Query 301 GGCCTACTCAGTGCCCATTTTGTAAAACTCCCAATTATGCTGTCGAGTATCGTGGCGTAA 360 |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || | Sbjct 784 GGCCTACTCAGTGCCCTTTTTGTAAAACTCCCAACTATGCTGTCGAGTATCGTGGAGTCA 843 Query 361 AGACAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAA 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 844 AGTCAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAA 903 Query 421 TAAGGATGAGGCAGAAGGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAAT 480 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 TAAGGATGAGGCAGAAAGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAAT 963 Query 481 CATGGTCCTCTAGCACAAGTGCAATGACTGGCGAGATGGAATATGGTTCAGCTTCAGCCA 540 |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 964 CATGTTCCTCTAGCACAAGCGCAATGACTGGCGAGATGGAATATGGTTCAACTTCAGCCA 1023 Query 541 TATCTTATAATTCCCCCATGGAAGACGGCGAAATTGCTCCATCACAGAACACAGCAGTGG 600 |||||||||| |||| |||||| ||||| |||||||||||||| |||||| || | || | Sbjct 1024 TATCTTATAACTCCCTCATGGATGACGGGGAAATTGCTCCATCGCAGAACGCATCTGTTG 1083 Query 601 TTAGACAGCATTCCCGTCCTCGAGGAAACAGGGATGATGAGGTTGACGTTGACCTTGAAG 660 ||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||| | Sbjct 1084 TTAGACAACATTCCCGCCCGCGAGGAAACAGGGAGGATGAGGTTGACGTTGACCTTGAGG 1143 Query 661 AATTGATGATTATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATT 720 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1144 AATTGATGGTCATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATT 1203 Query 721 CAGCTTCTGGGGAAATGACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTT 780 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1204 CAGCTTCAGGGGAAATTACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTT 1263 Query 781 CTTCACCACCACGAATGGCTCCAATCGTTGAACCAGCAACACTGTCCTCATCAGCTGGTG 840 |||||||||||||| || |||||||||| ||||||||||||| ||| |||||| |||||| Sbjct 1264 CTTCACCACCACGAGTGACTCCAATCGTAGAACCAGCAACACCGTCTTCATCATCTGGTG 1323 Query 841 GACTTGCTTGTGCAATCGCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAATC 900 | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1324 GGCTTTCTTGTGCAATCTCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAGTC 1383 Query 901 ACAATCACAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCTGGAAATTGTGACA 960 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1384 ACAATCATAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCCGGAAATTGTGACA 1443 Query 961 GTTACTACGACATAGAACAAGAGGTAGATGACATAGACAACCATCATCATCGTCATCATC 1020 |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 1444 GTTACTACGACATAGAACAAGAGGTAGATGGCATAGACAACCATCATCATCATCGTCATC 1503 Query 1021 ATTACCATAACAACACCGAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTT 1080 ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 ATTAC------------GAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTT 1551 Query 1081 ACATGACCGGCGAGAGCTTCCACAACTTTCTTCCTCCTCCTCCACCTCTGGTCATTGTTC 1140 ||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1552 ACATGACAGGCGAGGGCTTCCACAACTTTC--C-TCCTCCTCCACCTCTGGTCATTGTTC 1608 Query 1141 CAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATG 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1609 CAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATG 1668 Query 1201 CCACGACGACAAGTGCACCAACTGAAGTTACTTGGCAATAAATAGGATAATAATGGAAAC 1260 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1669 CCACGACGACATGTGCACCAACTGAAGTTACCTGGCAATAAATAGGATAATAATGGAAAC 1728 Query 1261 T 1261 | Sbjct 1729 T 1729 > AT1G17145.1 | Symbols: | RING/U-box superfamily protein | chr1:5860119-5862682 REVERSE LENGTH=1422 Length=1422 Score = 398 bits (215), Expect = 9e-110 Identities = 406/494 (82%), Gaps = 30/494 (6%) Strand=Plus/Plus Query 21 ATGGGTAATAAGTTGGGAAGGAAGAGGCAAG-TGGTGGAAGAAAGGTATACAAAG-C-C- 76 |||||||||||| ||||||||||||| | || | ||||| ||||| || |||||| | | Sbjct 183 ATGGGTAATAAGCTGGGAAGGAAGAGAC-AGATTGTGGACGAAAGATACACAAAGCCACA 241 Query 77 ACAAGGTTTGTATGTGAATAAAGATGTTGACGTTAAAAAGC-TCAGAAAACTGAT-TGTA 134 ||||||||| || ||| |||||||||||| ||||||||| | || ||||| || | || Sbjct 242 ACAAGGTTTATACATGAGCAAAGATGTTGACATTAAAAAGCTTAAG-AAACTCATCT-TA 299 Query 135 GAGTCTAAGCTTGCTCCTTGCTATCCCGGAGACGATGAAA------GCTGCCA-C--GAT 185 |||||||||||||||||||| ||||| || || |||| || ||| | ||| Sbjct 300 GAGTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCCCCTCCTCCCATCATGAT 359 Query 186 CTTGAAGAATGCCCCATTTG-TTTCCTGTATTATCCTAGCCTCAATAGATCAAGATGTTG 244 ||||||||||| || ||||| ||| ||||||||||| || || ||||| ||||||||||| Sbjct 360 CTTGAAGAATGTCCTATTTGCTTT-CTGTATTATCCGAGTCTTAATAGGTCAAGATGTTG 418 Query 245 CATGAAAAGCATCTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTCGGCC 304 ||||||||||| |||||||| || ||| ||| ||||||| |||||||||||||| || Sbjct 419 TATGAAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTCAACC 478 Query 305 TACTCAGTGCCCATTTTGTAAAAC-TCCCAATTATGCTGTCGAGTATCGTGG-CGTAAAG 362 |||||| ||||| ||||| ||||| | ||||||||||||||||||||||||| | ||| Sbjct 479 TACTCAATGCCCTTTTTGCAAAACAT-CCAATTATGCTGTCGAGTATCGTGGAGGGAAA- 536 Query 363 AC-AAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAAT 421 || ||| ||||| ||| || |||||||| |||||||||| || || |||||||||||||| Sbjct 537 ACTAAA-GAGGAGAAGAGCTTTGAACAAATTGAAGAGCAGCGAGTTATAGAAGCCAAAAT 595 Query 422 AAGGATGAGGCAGAAGGAAAT-GCAGGATGATGAAGAGAA-AATGCAGAAACGTCTTGAA 479 ||||||||||||||||||| | | || |||||||||| || ||||||||||||||| || Sbjct 596 AAGGATGAGGCAGAAGGAAGTTGAAG-ATGATGAAGA-AAGAATGCAGAAACGTCTGGAG 653 Query 480 TCATGGTCCTCTAG 493 |||| || ||||| Sbjct 654 TCATATTCTTCTAG 667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61997673075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5