BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927253
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78430.1 | Symbols: RIP2 | ROP interactive partner 2 | chr1:... 1531 0.0
> AT1G78430.1 | Symbols: RIP2 | ROP interactive partner 2 | chr1:29508959-29510895
FORWARD LENGTH=1500
Length=1500
Score = 1531 bits (829), Expect = 0.0
Identities = 954/1015 (94%), Gaps = 6/1015 (1%)
Strand=Plus/Plus
Query 1 GCAACTTTGCATAAATCAAAATGCCAAAACCAAGTATTAGAGGTTCAGAGTTGCCTCAGA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GCAACTTTGCATAAATCAGAATGCCAAAACCAAGTATTAGAGGTTCAGAGTTGCCTCAGA 349
Query 61 GGCAATCTCCTAGGCTAAGGACATCACTGGTGTCCACTTCCTCTGATCGGCATCACCTTA 120
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct 350 GGCAATCTCCTAGGCTAAGGACATCACTGTTGTCCACTTCCTCTGATCCGCATCACCTCA 409
Query 121 GCCGTCCGATTACAGACCGGAGTCCAAAGCTAGGCCTTGACCGTAGATCTCCGAGGAGTG 180
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 410 GCCGTCCGATTACAGACCGGAGTCCAAAGCTCGGCCTTGACCGTAGATCTCCAAGGAGTG 469
Query 181 GTGGGCCTCATACGGATCCGCTGACTCAGAAGAAGCTTGGAAGTCGTATCTCTGGCTTGG 240
||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 470 GTGGGCCTCATACAGATCCGCTGAGTCAGAAGAAGCTTGGAAGTCGCATCTCTGGCTTGG 529
Query 241 AGTCACAGCTAGGACAAGCCCAGGAAGAGTTGAGTTTGCTCAAACAGCAGTTGGCTAAAG 300
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 530 AGTCACAGCTAGGACAAGCCCAAGAAGAGTTGAGATTGCTCAAACAGCAGTTGGCTAAAG 589
Query 301 CGGAGGCTGCCAAGAAACGTGCCCAAGAAGAGCTTCTTAGGAAGAAATCCAAGAAATCGG 360
| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 590 CCGAGGCTGCCAAGAAACGTGCTCAAGAAGAGCTTCATAGGAAGAAATCCAAGAAACCGA 649
Query 361 ACCCTCCTGCTCAGGAGAGAGATGACATTCCTGGAGATGGACATCAAGAGACCGATGTGT 420
|| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 650 ACACTCCTGCTCCGGAGAGAGATGACATTCCTGGAGATGGACATCAAGAGACAGATGTGT 709
Query 421 TCGAGGTTCTTGTTGAGAAAGAAAAAGAAAGTGAGAAGACGAAGAATGATGAATTGGCTT 480
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 710 TCGAGGTTCTTGATGAGAAAGCAAAAGAAAGTGAGAAGACGAAGAATGATGAATTGGCTT 769
Query 481 CTAAGGAAGACCAAATCAATGTATTGAAAGCTAGACTATATGACTTGGAGAAAGAAAGGG 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 770 CTAAGGAAGACCAAATCAATGTATTGAAAGCTAGATTATATGACTTGGAGAAAGAAAGGG 829
Query 541 TATCACTTGGCCAAGAGAACGAGGGCTTGAAGAATCAGTTGAAGAAGACGGATTCGGAAA 600
|||||||| || | ||||| ||| ||||||| |||||||||||||||||||| ||||||
Sbjct 830 TATCACTTAGCGAGGAGAATGAGACCTTGAAGGATCAGTTGAAGAAGACGGATACGGAAA 889
Query 601 TGTCCAGCGCAAAGGCGAAAGAAGATGAGATAGCTTCAAAGGTGAGTCAGATTGGGGAAG 660
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 890 TGTCCTGCGCAAAGGCGAAAGAGGATGAGATAGCTTCAAAGGTGAGTCAGATTGGGGAAG 949
Query 661 AACTAGAAGAAAGCAATGAGACCACAGCGAAGCTAAAGAAAAAGCTCGAATCCGTGGAAG 720
|| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 950 AATTGGAAGAAAGCAATGAGACCACAGCGAAGCTAAAGAAGAAGCTCGAATCCGTGGAAG 1009
Query 721 AAGCAAAAGAGAGTCTAGAAGCTGAGATGAAGAAGCTGAAGGTCCAAACCGAGCAGTGGA 780
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1010 AAGCAAAAGAGACTCTAGAAGCTGAGATGAAGAAGCTGAAGGTCCAAACAGAGCAGTGGA 1069
Query 781 GGAAAGCAGCGGATGCAGCAGCTGCAGTTTTAGCTGGAGGGGTCGAGATGAATGGCCGGT 840
|||||||||| ||||| |||||||| |||||| |||||||||| ||||||||||| ||||
Sbjct 1070 GGAAAGCAGCAGATGCTGCAGCTGCGGTTTTATCTGGAGGGGTTGAGATGAATGGTCGGT 1129
Query 841 TCTCAGAGCAGTATGGGTCAATGGAGAAGCATTTTGCAGGCAGGTTTGTCGGATCACCGG 900
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TCTCAGAGCAGTGTGGGTCAATGGAGAAGCATTTTGCAGGCAGGTTTGTCGGATCACCGG 1189
Query 901 GAATGGCTGATGATTCTGATGACGGGTTAGGGTTTGGGAAGAGGAAAGGTTCAGGGATGA 960
|||||||||||||||| |||||||||| | |||||||||||| |||| |||| ||
Sbjct 1190 GAATGGCTGATGATTCGGATGACGGGTC----T--GGGAAGAGGAAAAGTTCTGGGAAGA 1243
Query 961 AAATGTTCGGTGACCTGTGGAAGAAGAAAGGGCAAAAATGAAGTGATAGAACAAA 1015
| |||||||||||| | ||||||||||||||||| ||||||||||||| || |||
Sbjct 1244 AGATGTTCGGTGACTTATGGAAGAAGAAAGGGCAGAAATGAAGTGATATAATAAA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5