BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927256
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78460.1 | Symbols: | SOUL heme-binding family protein | ch... 887 0.0
> AT1G78460.1 | Symbols: | SOUL heme-binding family protein |
chr1:29518316-29519323 REVERSE LENGTH=918
Length=918
Score = 887 bits (480), Expect = 0.0
Identities = 626/694 (90%), Gaps = 19/694 (3%)
Strand=Plus/Plus
Query 1 TCATTAAAGTCTATTCAATCATGGAAACCGGTTTAAACATCTTAAAGCTATCGCTATGCC 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 TCATTTAAGTCTATTCAATCATGGAAACCGGTTTAAACATCTTAAAGCTATCGCTATGCG 67
Query 61 TCAGCCTAGCCGTGGTTGGATCATATGCTCAAGCTCCCGCACC-----AT---T-TAATG 111
||||||||| ||||||||||||||||||||| ||||||||||| || | |||||
Sbjct 68 TCAGCCTAGTCGTGGTTGGATCATATGCTCAGGCTCCCGCACCATGGAATCCATCTAATG 127
Query 112 GGTTTCGTCCTGGAACATGTGACCACTACGAGTGCCCCACCTATAAACTGGTAGAGGCCG 171
|||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 128 GGTTTCGTCCGGGGACATGTGACCACTACGAGTGTCCCACCTATAAATTGGTAGAGGCCG 187
Query 172 GATACGGCTTTGAGATCCGAATGTATGACGCTGCGCTATGGATTTCTACTAGTCCTATCC 231
||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||
Sbjct 188 GATACGGCTTTGAGATCCGCATGTACGACGCTGCCCTATGGATATCTACTAGTCCTATCC 247
Query 232 CCGCCCCATCCATGACTCAAGCCACCAAAACCGGTTTCCGACGATTATTTAGTTACATAC 291
|| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 248 CCTCCCTATCCATGACTCAAGCCACCAAAACCGGTTTCCGACGATTAAATAGGTACATAG 307
Query 292 AAGGAGATAACAAGAGCAAAGTGAAAATGAACATGACAGCTCCGGTGATCACACAAGCAA 351
||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 308 AAGGAGATAACAAGAGCAACGTGAAGATGAACATGACAGCTCCGGTGATCGCACAAGCAA 367
Query 352 CGCCGGGAAAATCAGTCTACACGATCTC-CTTCTACCTCCCGAAGAAGAACCAACAGAAC 410
|||| |||| ||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 368 CGCCTGGAAGATCAGTCTACACGGTCTCAC-TCTACCTCCCGAAGAAGAACCAACAGAAC 426
Query 411 CCACCTCAGGCCGATGATCTCCATGTGCAGTC-ATGGAAACCAACCTACGTAGCCGTGAG 469
||||||||||||||||||||||| || | ||| | | |||||||| ||||||||||||||
Sbjct 427 CCACCTCAGGCCGATGATCTCCACGTTCGGTCTACG-AAACCAACTTACGTAGCCGTGAG 485
Query 470 GCAGATCGGTGGGTACGTGTCGGATGATGTAGCCAAGAAAGAAGCTGCGGCTCTGATGGA 529
||||||||||| ||||||||| | ||||||||||| | ||||||||||||||||||||
Sbjct 486 ACAGATCGGTGGCTACGTGTCGAACAATGTAGCCAAGGACGAAGCTGCGGCTCTGATGGA 545
Query 530 AAGCCTCCAG-AGTTCTGACTGGATTTTACCCGTCGAGAAGAGCAGAGGAAAGTCGCCGG 588
|||||||| | | |||| |||||||||| ||| |||||||||||| |||||||| |||||
Sbjct 546 AAGCCTCCGGGA-TTCTAACTGGATTTTGCCCATCGAGAAGAGCAAAGGAAAGTTGCCGG 604
Query 589 CGTATATAGTCGCTGATTATAACCCGCCGTCTCAGACCACGGCTAGGGT--T-AATGAGA 645
||||| | |||||| |||||||||||| ||||| |||||||||||||| | |||||||
Sbjct 605 CGTATTTTCTCGCTGTTTATAACCCGCCATCTCATACCACGGCTAGGGTGATTAATGAGA 664
Query 646 TCATGGTTCCATTTAACATGTA-ATCATGTTAAT 678
|||||||||| ||||||||||| |||||||||||
Sbjct 665 TCATGGTTCCGTTTAACATGTAGATCATGTTAAT 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5