BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927270
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78560.1 | Symbols: | Sodium Bile acid symporter family | c... 1964 0.0
> AT1G78560.1 | Symbols: | Sodium Bile acid symporter family |
chr1:29546605-29548824 REVERSE LENGTH=1507
Length=1507
Score = 1964 bits (1063), Expect = 0.0
Identities = 1185/1244 (95%), Gaps = 8/1244 (1%)
Strand=Plus/Plus
Query 1 GAATCGCCGGTGAG-AAA-ATTAT-G-G-CGGCGATTTCCCTCTCTCTCGTGAACGGAGC 55
|||||||||||||| ||| | || | | |||||||||| || |||||| | ||||||||
Sbjct 39 GAATCGCCGGTGAGAAAAGAAAATGGCGTCGGCGATTTCTCTTTCTCTCTTAAACGGAGC 98
Query 56 AACGCCTTTGAAATCGAATTCGCTCCACAAATCTAAACTCACTCCACTCCACCTTCGGCC 115
||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |
Sbjct 99 AACGCCTTTGAAATCGAATTCGCTCCACAAATCTAGACTCACTCCACTTCATCTTCGAAC 158
Query 116 TATCTCTTGTTCTAGGCTTTCTTATTCTTCCTCGAGTCGCGAAATTTCTCTCAAAACCCA 175
||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 159 TATCTCTTGTTCTAGACTATCTTACTCTCCCTCGAGTCGCGAAATTTCTCTCAAAACTCA 218
Query 176 ATCTACTGTTCCTATTTCGTGTAGGC---GTAGGTTTGACTTCGTTCCTCGTTGCGGCAT 232
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 219 ATCTACTGTTCCTATTTCGTGTAGGCGTAGTAGGTTTGACTTCGTTCCTCGTTGCGGCAT 278
Query 233 TTCGTCGAACGATTTGCCTACTGAGAAAAAGAAGAGCTTTGGCGAGTGGGTTGAGTTTGT 292
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 279 TTCGTCGAACGATTTGCCTACTGAGAAAAAGAAGAGCTTTGGGGAGTGGGTTGAGTTTGT 338
Query 293 GGGAGAGGCGGTTTCGACGGCGTTTCCGATATGGGTTTCTCTGGGATGCTTGTTGGGACT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GGGAGAGGCGGTTTCGACGGCGTTTCCGATATGGGTTTCTCTGGGATGCTTGTTGGGACT 398
Query 353 GATGAGACCAAGTACTTTCAATTGGGTCACTCCAAATTGGACCATTGCAGGTCTTACGAT 412
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 399 GATGAGACCAAGTACTTTCAATTGGGTTACTCCAAATTGGACCATTGTAGGTCTTACGAT 458
Query 413 CACGATGCTTGGAATGGGAATGACTTTGACCTTTGACGATCTTCGTGGCGCTTTCTCGAT 472
||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 459 CACTATGCTTGGAATGGGAATGACTTTGACCCTTGATGATCTTCGTGGCGCTTTATCGAT 518
Query 473 GCCCAAGGAGCTCTTCGCTGGCTTTGTGTTGCAATACTCGGTGATGCCACTATCAGCATT 532
||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 519 GCCCAAGGAGCTCTTCGCTGGCTTTCTGTTGCAGTATTCGGTCATGCCACTATCAGCATT 578
Query 533 TTTTGTGAGTAAACTCTTAAATTTGCCACCACATTACGCAGCCGGTCTCATATTGGTTGG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TTTTGTGAGTAAACTCTTAAATTTGCCACCACATTACGCAGCCGGTCTCATATTGGTTGG 638
Query 593 TTGCTGTCCAGGCGGCACGGCAAGTAATATTGTCACATACATTGCACGTGGAAATGTTGC 652
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 639 TTGCTGTCCAGGCGGCACGGCTAGTAATATTGTCACATACATCGCGCGTGGAAATGTTGC 698
Query 653 GCTATCAGTGTTGATGACTGCAGCTAGCACTGTTTCAGCTGTGATTATGACACCGCTTCT 712
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GCTATCAGTGTTGATGACAGCAGCTAGCACTGTTTCAGCTGTGATTATGACACCGCTTCT 758
Query 713 TACGGCGAAGCTTGCCAAGCAATATATCACAGTTGATGCTCTTGGATTACTAATGTCAAC 772
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 759 TACGGCGAAGCTTGCCAAGCAGTATATCACAGTTGATGCTCTTGGATTACTAATGTCAAC 818
Query 773 TCTACAGGTGGTTCTTCTCCCAGTGTTGGCTGGTGCATTTCTGAACCAATACTTTCAAAA 832
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 819 ACTACAGGTGGTTCTTCTCCCAGTGTTGGCTGGTGCATTTCTTAACCAATACTTTAAAAA 878
Query 833 GCTGGTGAAATTTGTTTCTCCTGTGATGCCTCCAATTGCGGTTGGAACCGTTGCAATTCT 892
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 879 GCTGGTGAAATTCGTCTCTCCTGTGATGCCTCCAATTGCGGTTGGAACAGTTGCAATCCT 938
Query 893 GTGTGGGTATGCTATCGGTCAGAACGCATCTGCAATACTCATGTCTGGGAAACAAGTAGT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GTGTGGGTATGCTATCGGTCAGAACGCATCTGCAATACTCATGTCTGGGAAACAAGTAGT 998
Query 953 CCTGGCTTCATGTCTTCTTCACATCTCTGGATTTCTCTTTGGGTATCTGTTTTCAAGATT 1012
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 999 CTTGGCTTCATGCCTTCTTCACATCTCTGGATTTCTCTTTGGGTATCTGTTTTCAAGAAT 1058
Query 1013 ACTCGGAATAGATGTGGCATCATCGAGAACTATCTCTATCGAAGTTGGCATGCAGAACTC 1072
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 ACTCGGAATTGATGTGGCATCATCGAGAACTATCTCTATCGAAGTTGGCATGCAGAACTC 1118
Query 1073 GGTGCTTGGAGTTGTTCTTGCGACACAGCATTTTGGGAATCCGCTCACTGCAGTACCGTG 1132
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1119 GGTGCTTGGAGTTGTTCTTGCGACACAGCATTTTGGGAATCCACTCACTGCAGTACCGTG 1178
Query 1133 CGCTGTTTCTAGCGTCTGTCACTCAATCCTCGGTAGTGCCTTGGCTGGAATATGGAGAGG 1192
|||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |
Sbjct 1179 CGCTGTTTCTAGCGTCTGTCACTCAATCCTCGGTAGCGTCTTGGCTGGAATTTGGAGACG 1238
Query 1193 TAGTGCCCCAAAACAGATTGAAGACTGAAAAGAAAGCAAAGGAA 1236
||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1239 CAGTGCCCCAAAACAGCTTGAAGACTAAAAAGAAAGCAAAGGAA 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5