BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927275
Length=2614
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78610.1 | Symbols: MSL6 | mechanosensitive channel of small... 3982 0.0
> AT1G78610.1 | Symbols: MSL6 | mechanosensitive channel of small
conductance-like 6 | chr1:29569030-29572126 REVERSE LENGTH=2767
Length=2767
Score = 3982 bits (2156), Expect = 0.0
Identities = 2469/2615 (94%), Gaps = 42/2615 (2%)
Strand=Plus/Plus
Query 21 ATGGCCGTTGATTCGGCTGACCGGCGAGAAGTTATCGTCAAAATCGACGGT-------G- 72
|||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGCCGTTGATGCGGCTGACCGGCGAGAAGTTATCGTCAAAATCGACGGTGAAAACGGA 60
Query 73 -ATAACAATGGAGTCTCCGGAGAGACTGTAGG-AAGAATATGGAGAGACGGAAGTTACGA 130
| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 61 AACAACAATGGAGTCTCCGGAGAGACTGTAGGAAAG-ATATGGAGAGACGGAAGCTACGA 119
Query 131 TTTTTGGACTGATGGTGAAGGTAACCTCAACAAAGGTCATAATGCTGCGGCGGTTGATTC 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTTTGGACTGATGGTGAAGGTAACCTCAACAAAGGTCATAATGCTGCGGCGGTTGATTC 179
Query 191 CGATAGATCCGCCGCCACCACGGAGGAGCAAC---AAGATGAGGGTTTTGAGTTTCGGCG 247
||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||
Sbjct 180 TGATAGATCCGCCGCCACGACGGGGGAGCAACAAAAAGATGAGGGTTTTGAGTTTCGTCG 239
Query 248 CGGCGAAGATCCTCCCACCAAGCTTATTGGTCAGTTTCTCCATAAACAGCAAGCTTCCGG 307
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CGGCGAAGATCCTCCCACGAAGCTGATTGGTCAGTTTCTCCATAAACAGCAAGCTTCCGG 299
Query 308 TGAGATTTGTCTT-GATATGGACTTAGGTATGGATGAGCTTCAATCTAGAGGTTTAACTC 366
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 TGAGATTTGT-TTAGATATGGACTTAGGTATGGACGAGCTTCAATCTAGAGGTTTAACTC 358
Query 367 CGGTATCGGAATCTCCGACGTCGGCGAAAGTGCCTACCAAACCTCCTGACCCCGTGGGAA 426
|||||||||||||||||| | ||| ||| |||| | ||||||||||||||
Sbjct 359 CGGTATCGGAATCTCCGA-------G--AGTTTCTA-CAAA--ACGTGACCCCGTGGGAA 406
Query 427 GACGAGACAGCCGCAGTAATAACAACAATAACGATGATGGAGAAGTTGTCAAGTGTAGTG 486
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 407 GACGAGACAGTCGCAGTAATACCAACAATAACGATGATGGAGAAGTTGTCAAGTGTAGTG 466
Query 487 G---TAATGCTCCGATTCAGAGAAGCTCTAGCAATTTGCTTAAGATGAGGACTAAGTCAC 543
| ||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||
Sbjct 467 GTAATAATGCTCCGATTCAGAGAAGCTCTAGCACTTTACTTAAGATGAGAACTAGGTCAC 526
Query 544 GGCTTTCGGATCCGCCAACGCCTCAGTTGCCACCGCAAACGGCGGATATGAAATCGGGTC 603
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 527 GTCTTTCGGATCCGCCAACGCCTCAGTTGCCGCCGCAAACGGCGGATATGAAGTCGGGTC 586
Query 604 GGATCCCGAAATCCGGGCAGATGAAATCTGGGTTTTTCGGAAAAAGCCCTAAGAATCAAG 663
|||| ||||||||||||||||||||||| || ||||| |||||||||||||||| |||||
Sbjct 587 GGATTCCGAAATCCGGGCAGATGAAATCAGGTTTTTTTGGAAAAAGCCCTAAGACTCAAG 646
Query 664 GGGAGGAAGAAGAAGATGATCCATTTGCAGCGGAGGATTTACCAGAAGAGTACAGGAAAG 723
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 647 GTGAGGAAGAAGAAGATGATCCATTTGCAGCAGAGGATTTACCAGAAGAGTATAGGAAAG 706
Query 724 ATAAACTTAGTCTATGGATTGTGTTGGAATGGTTGAGTTTGATTTTGATTATAGCTGGCT 783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 707 ATAAACTTAGTCTATGGATTGTGTTGGAATGGTTGAGTTTGATTTTGATTATAGCTGGGT 766
Query 784 TTGTTTGCACTCTTGCCATACCTTCCTTGCGTAGGAAGAAACTCTGGGAACTTCAGCTAT 843
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 767 TTGTTTGCACTCTTGCGATACCTTCCTTGCGTAAGAAGAAACTCTGGGAACTTCAGCTAT 826
Query 844 GGAAATGGGAGTCAATGATTTTAGTGTTGATCTGTGGTAGGTTAGTGTCTAGTTGGATTG 903
||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||
Sbjct 827 GGAAATGGGAGTCAATGGTTTTAGTGTTGATCTGTGGTAGGTTAGTCTCGAGCTGGATTG 886
Query 904 TTAAGATTGTTGTCTTCTTCATCGAAAGGAACTTTCTTTTGAGGAAAAGAGTTTTGTATT 963
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TGAAGATTGTTGTCTTCTTTATCGAAAGGAACTTTCTTTTGAGGAAAAGAGTTTTGTATT 946
Query 964 TCGTCTATGGTGTCCGAAAAGCGGTGCAGAATTGCTTATGGTTAGGACTTGTTTTACTCG 1023
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 947 TCGTTTATGGTGTCCGAAAAGCGGTGCAGAATTGCTTATGGTTAGGACTTGTTTTACTGG 1006
Query 1024 CTTGGCATTTCTTGTTTGATGAGAAAGTGGCTAAAGCAGCAAACACTAAGGCTCTTCGGG 1083
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1007 CTTGGCATTTCTTGTTTGATGAGAAAGTGGCTAAAGCAGCAAACACTAAGGCGCTTCGTG 1066
Query 1084 TTGTGACTAAGATCTTTGTGTGTTTGTTGGTTGGGTTCTTGTTGTGGCTCGTGAAGACAC 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TTGTGACTAAGATCTTTGTGTGTTTGTTGGTTGGGTTCTTGTTGTGGCTCGTGAAGACAC 1126
Query 1144 TGTTGGTCAAGGTTCTTGCTTCCTCGTTCCATATGAGCACTTACTTCGATAGGATTCAAG 1203
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1127 TGTTGGTCAAAGTTCTTGCTTCATCGTTTCATATGAGCACTTACTTCGATAGGATTCAAG 1186
Query 1204 AGTCTCTCTTTACTCAGTATGTGATTGAGACGCTCTCGGGTCCTCCTTTGATTGAGATCC 1263
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 AGTCTTTGTTTACTCAGTATGTGATTGAGACGCTCTCGGGTCCTCCTTTGATTGAGATCC 1246
Query 1264 aaaaaaaCGAGGAAGAGGAAGAGAGAATAAGTGTTGAGGTTAAGAAGTTTCAGAATCCCG 1323
||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1247 AAAAAAATGAGGAAGAGGAAGAGAGAATCAGTGTTGAGGTTAAGAAGTTTCAAAATCCAG 1306
Query 1324 GAGGTGTTGAGATTCAGTCAGGGGCTCAGAAAAGTCCGATGAAGACCGGGAAAAGCCC-T 1382
| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1307 GGGGTGTTGAGATTCAGTCAGGAGCTCAGAAAAGTCCAATGAAGACCGGGAAAAGCCCGT 1366
Query 1383 TTGATCTCTCGTGTTCTATCTAATggaggaggaggaggaggaggaggagAAAACAAAGGG 1442
|| |||||| ||||||||||||| |||||| | || |||||||||||||||||||||
Sbjct 1367 TT-CTCTCTCATGTTCTATCTAAT---GGAGGA-G-GG-GGAGGAGGAGAAAACAAAGGG 1419
Query 1443 ATTACGATCGATAGCCTTCATAAGCTGAATCCTAAGAATGTTTCGGCGTGGAAAATGAAG 1502
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1420 ATTACGATCGATAGCCTTCATAAGCTGAATCCTAAGAATGTTTCCGCATGGAAAATGAAG 1479
Query 1503 AGGCTGATGAATATAATCCGGAATGGATCACTTACCACTTTGGATGAACAGCTTGAAGAT 1562
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1480 AGGCTGATGAATATAATCCGGAATGGATCACTTACCACTTTGGATGAACAGCTTCAGGAT 1539
Query 1563 CCAAACTTGGATGATGATAAAGGAAACCAAATCAGAAGTGAGTTTGAGGCAAAGCTCGCC 1622
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1540 CCAAGCTTGGATGATGATAAAGGAAACCAAATTAGAAGTGAGTTTGAGGCAAAGCTCGCT 1599
Query 1623 GCAAGAAAGATCTTTCATAATGTTGCTAAGCCAGGATCAAAGTTCATCTACGCGAATGAC 1682
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1600 GCAAGAAAGATCTTTCATAATGTTGCTAAGCCAGGATCAAAGTTCATCTATGCAAACGAC 1659
Query 1683 ATTATGCGGTTTCTGCCGGATGACGAAGCTTTGAAGACTTTAAGTCTCTTTGAAGGAGCA 1742
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 ATAATGCGGTTTCTGCCAGATGACGAAGCTTTGAAGACTTTAAGTCTCTTTGAAGGAGCA 1719
Query 1743 TCTGAGACGAACAGGATCAGCAAATCATCTCTTAAAAACTGGGTGGTGAATGCTTTTAGA 1802
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1720 TCTGAGACGAACAGGATCAGCAAGTCATCTCTTAAAAACTGGGTGGTGAATGCTTTTAGA 1779
Query 1803 GAAAGAAGAGCTCTTGCATTGACCCTAAACGACACCAAAACAGCAGTAAACAGGCTTCAC 1862
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 GAGAGAAGAGCTCTTGCATTGACCCTAAACGACACCAAAACAGCAGTAAACAGGCTTCAC 1839
Query 1863 AAGATGGTGAATATCGTGGTTGGGATCATCATACTTGTTATTTGGCTTATCATACTTGGA 1922
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1840 AAGATGGTGAATATCGTGGTTGGGATCATCATACTTGTTATCTGGCTTATCATACTTGGA 1899
Query 1923 ATCACTTCCACCAAGTTCCTCGTGGTCATGAGCTCGCAAGTTGTGGTTGTCGCATTCATA 1982
|||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1900 ATCACTTCCACCAAATTCCTCGTCGTCATGAGCTCGCAAGTCGTGGTTGTAGCATTCATA 1959
Query 1983 TTTGGAAACATGTGCAAGATAGTATTCGAATCTATCATCTACTTGTTTGTGATACACCCA 2042
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1960 TTTGGAAACATGTGCAAGATAGTATTTGAATCTATCATCTACTTGTTTGTGATACATCCG 2019
Query 2043 TTTGATGTAGGCGATCGATGCGAGATTGATGGAGTCCAGATGGTTGTGGAAGAGATGAAC 2102
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2020 TTTGATGTAGGCGATCGATGTGAAATTGATGGAGTCCAGATGGTTGTGGAAGAGATGAAC 2079
Query 2103 ATTTTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTT 2162
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2080 ATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTT 2139
Query 2163 CTCTGGACTAAATCCATTGGAAACTATTACCGTAGCCCCGATATGGGAGATGGAATCGAA 2222
||||||||||||||||| ||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 2140 CTCTGGACTAAATCCATCGGAAATTATTACCGTAGTCCTGATATGGGAGATGGTATCGAA 2199
Query 2223 TTCTCCATCCACATTACTACTCCAGCTGAGAAAATCATCCTCATCAAACAGAGAATCACA 2282
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2200 TTCTCCATCCACATTACTACTCCAGCTGAGAAAATCATACTCATCAAACAGAGAATCACA 2259
Query 2283 AGTTACATTGAGGGGAAGAAGGATCATTGGTATCCGGCGCCGATGATAGTATTCAAAGAC 2342
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2260 AGTTACATTGAGGGCAAGAAGGATCATTGGTATCCAGCGCCAATGATAGTATTCAAAGAC 2319
Query 2343 ATGGAGTCATTAAACAGTGTGAGAATTGCGGTTTGGCCAACGCATCGAATGAATCATCAA 2402
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2320 ATGGAGTCATTAAACAGCGTGAGAATTGCGGTTTGGCCAACACATCGAATGAATCATCAA 2379
Query 2403 GATATGGGAGAGAAATGGGCTCGAAGGTCTCAACTTGTTGAAGAAATTGCCAAGATTTGC 2462
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2380 GATATGGGAGAGAAATGGGCTCGAAGGTCTCAACTTGTTGAAGAGATTGCCAAAATTTGC 2439
Query 2463 AGAGAGCTCGACATTGAGTATAGATTGTATCCTCTTGACATCAATGTCCGAAACATGCCC 2522
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 2440 AGAGAGCTTGACATTGAGTATAGATTGTATCCTCTTGATATCAATGTCCGAAACTTGCCC 2499
Query 2523 ACTTCTACTGTTTTGCCAGTTTCCGACCGTCTTCCACCAAATTGGACTGCTCCAGCTTCT 2582
|||||||| | |||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2500 ACTTCTACGGCTTTGCCTGTTTCCGACCGTCTTCCACCAAACTGGAGTGCTCCAGCTTCT 2559
Query 2583 GGCAGCAACTGA-AA-CTATA-ATAAAACTTTTTA 2614
|||||||||||| || ||||| |||||||||||||
Sbjct 2560 GGCAGCAACTGAGAAACTATAGATAAAACTTTTTA 2594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129781881541
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5