BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927279
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78640.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 861 0.0
> AT1G78640.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: AP2/B3-like transcriptional factor family protein (TAIR:AT2G33720.1);
Has 92 Blast hits to 55 proteins in 5 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:29579715-29581988 REVERSE LENGTH=1464
Length=1464
Score = 861 bits (466), Expect = 0.0
Identities = 634/709 (89%), Gaps = 36/709 (5%)
Strand=Plus/Plus
Query 51 GCAAAGAAGAGTCAGACGTTTATTAGCCAAGAGCAGCAGGGGACGTCTCCGATGAACACA 110
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 763 GCAAAGAAGAGTCAGACGTTTATGAGCCAAGAGCAGCAGGGGACGTCTCCGTTGAACACA 822
Query 111 GACGAAGCCTTGAAGGGTCATCATTGCTTCT-GGAAAACCCCAAATTACCTTGAAAGTAC 169
||||||||||| ||| |||||||| |||||| | | || |||||||||| | |||||||
Sbjct 823 GACGAAGCCTTAAAGAGTCATCATAGCTTCTCGCAGAA-CCCAAATTACATCGAAAGTAA 881
Query 170 TCTGTCTAGAAGATACCAGAGTAACTTTTCGCTTGGCTCACAAAGATTCTCTGGCCAGTT 229
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct 882 TCTGTCTAGAAGATACCAGACTAACTTTTCGCTTGGCTCACAAAGAATCTCTGGGCAGTT 941
Query 230 TCTGATGATCCCTAACCCTGGATTTGTCGACATAAGTTCGATGACAAATAGTCAGGATAC 289
| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct 942 TTTGATGATCCCTAATCCTGGATTTGTCGACACAAGTTCGATGACAAATACTCACGATAC 1001
Query 290 CAATCCAGCAAGTTTTC--A----G----C--CTACCAATCCAAAGATTATCTTGAAAGA 337
|| || ||||| ||||| | | | ||||||||||||||||||||||||||||
Sbjct 1002 CAGTCTAGCAAATTTTCAGACTGTGCCTACAACTACCAATCCAAAGATTATCTTGAAAGA 1061
Query 338 GGAAAAAGAAAAT---GAGGAGCAACAGTACTGGACCATCAAGAAGGAACTGACCAAGAG 394
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GGAAAAAGAAAATGAGGAGGAGCAACAGTACTGGACCATCAAGAAGGAACTGACCAAGAG 1121
Query 395 CAATG-TTGCCTACGGTACTTGCCGTCGACTTACTCTGTCAAAAAGCTCCGTTGAGGAGC 453
| ||| ||||| | | || | |||||||||||||||||||| ||||||||||
Sbjct 1122 CGATGCTTGCC-A----A-----CG--G-CTTACTCTGTCAAAAAGCTCTGTTGAGGAGC 1168
Query 454 ACATTCTGAAACATCTCCTTCCAGAAGATTCCAAAAAGATAGACAAAGGCAAGCCCGGAA 513
||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1169 ACATTCTCAAGCATCTCCTTCCAGAAGATTCCCAAAAGATAGACAAAGGCAAGCCCGGAA 1228
Query 514 TCACGGTTATGGTGTACGACCACGATACAGACACTGAGCACGAGCTCTGTCTAGCATTCC 573
||||||||| ||| |||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 1229 TCACGGTTAAGGTATACGACAACGATACTGACACTGAGCACGAGCTATGTCTAGCATTCC 1288
Query 574 AGCGTAGCTATGTTCTAAAGAATGGTTGGGTTAAAACATTTATCAAAAGGAGAGGCTTGG 633
|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 1289 AGTGTAGCTATGTTCTAAAGAATGGTTGGGTGAAAACATTTGTCAAAAGGAGAGGGTTGG 1348
Query 634 AGGAAGGAGACAAGATTGGTCTCTTCTGGGAATGCTCTACTTATAAGCTTCATTTTAGTG 693
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1349 AGGAAGGAGACATGATTGGTCTCTTCTGGGAATGCTCTACTTCTAAGCTTCATTTTAGTG 1408
Query 694 TGCTTTCTCGTGTAAA-GACAAAAGCTCC---AGCATAAGAAAAAGAAG 738
|||||| ||||||||| | |||||||||| |||| ||||||||||||
Sbjct 1409 TGCTTTTTCGTGTAAATG-CAAAAGCTCCTGCAGCAGAAGAAAAAGAAG 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5