BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927285
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78700.1 | Symbols: BEH4 | BES1/BZR1 homolog 4 | chr1:295993... 1644 0.0
> AT1G78700.1 | Symbols: BEH4 | BES1/BZR1 homolog 4 | chr1:29599349-29601682
FORWARD LENGTH=1626
Length=1626
Score = 1644 bits (890), Expect = 0.0
Identities = 976/1018 (96%), Gaps = 4/1018 (0%)
Strand=Plus/Plus
Query 5 GAAGAAACAGAGAGTAGTGATGACGTCGGGGACGAGAATGCCGACATGGAGGgagagaga 64
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 487 GAAGAAACAGAGAGTAGTGATGACATCAGGGACGAGAATGCCGACATGGAGGGAAAGAGA 546
Query 65 gaacaacaagagaagagagagacgacggagagCAATCGCAGCAAAGATCTTCACCGGATT 124
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 547 GAACAACAAGAGAAGAGAAAGACGACGGAGAGCAATCGCAGCTAAGATCTTCACCGGATT 606
Query 125 AAGAATGTACGGTAACTACGAGCTTCCGAAGCATTGCGACAACAACGAAGTGCTTAAAGC 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AAGAATGTACGGTAATTACGAGCTTCCGAAGCATTGCGACAACAACGAAGTGCTTAAAGC 666
Query 185 ACTCTGCAACGAAGCTGGTTGGATCGTCGAACCTGATGGAACTACTTACCGCAAGGGATG 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACTCTGTAACGAAGCTGGTTGGATCGTCGAACCTGATGGAACTACTTACCGCAAGGGATG 726
Query 245 TAGTAGACCTGTAGAGCGTATGGAGATAGGTGGCGGTTCAGCAACCGCTAGTCCTTGCTC 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 727 TAGTAGACCTGTAGAGCGTATGGAGATAGGTGGTGGTTCAGCAACCGCTAGTCCTTGCTC 786
Query 305 CTCCTATCAGCCAAGTCCGTGTGCTTCTTATAATCCTAGCCCAGGCTCCTCCAACTTCAT 364
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 787 TTCCTATCAGCCAAGTCCCTGTGCTTCTTATAATCCTAGTCCAGGCTCCTCCAACTTCAT 846
Query 365 GAGTCCTGCTTCATCCTCATTTGCTAATCTTACCTCTGGAGACGGCCAATCACTAATCCC 424
||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 847 GAGTCCTGCTTCATCCTCATTTGCTAATCTTACCTCTGGTGATGGCCAATCTCTCATCCC 906
Query 425 GTGGTTGAAACACCTCTCAACAACATCATCCTCATCAGCTTCTTCGTCATCAAGACTCCC 484
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 907 ATGGCTAAAACACCTCTCAACAACATCATCCTCATCAGCTTCTTCATCATCAAGACTCCC 966
Query 485 TAATTACCTCTACATCCCTGGAGGCTCCATAAGCGCTCCTGTAACCCCTCCTTTAAGCTC 544
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 967 TAATTACCTCTATATCCCTGGAGGCTCCATAAGCGCTCCTGTAACTCCTCCTTTAAGCTC 1026
Query 545 TCCAACAGCTCGTACCCCGAGGATGAACGCTGATTGGCAACAACTCAACAACTCCTTCTT 604
||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct 1027 TCCAACAGCTCGTACCCCGAGAATGAACACTGATTGGCAGCAACTCAACAACTCCTTCTT 1086
Query 605 TGTCTCCTCAACACCGCCAAGTCCCACGCGACA-A--ATCCCTGACTCTGAATGGTTCTC 661
|||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1087 TGTCTCCTCAACACCGCCAAGTCCCACGCGTCAGATCATCCCTGACTCTGAATGGTTCTC 1146
Query 662 AGGGATTCAACTAGCACAAAGTGTTCCAGCTTCACCAACGTTTAGCCTTGTTTCACAAAA 721
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1147 AGGGATTCAACTAGCACAAAGTGTTCCAGCTTCACCAACGTTTAGCCTCGTCTCACAAAA 1206
Query 722 CCCATTCGGATTCAAAGAAGAAGCAGCCTCTGCTGCTGGAGGCGGAGGCGGATCAAGGAT 781
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1207 CCCATTTGGATTCAAAGAAGAAGCAGCCTCTGCTGCTGGAGGCGGAGGAGGGTCAAGGAT 1266
Query 782 GTGGACACCGGGTCAAAGCGGAACTTGCTCCCCTGCTATTCCTCCTGGTGCTGACCAGAC 841
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1267 GTGGACACCAGGTCAAAGCGGAACCTGCTCCCCTGCTATTCCTCCTGGTGCTGACCAGAC 1326
Query 842 AGCAGATGTGCCAATGTCTGAAGCCGTGGCTCCTCCAGAGTTTGCTTTCGGGAGTAACAC 901
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1327 AGCAGATGTTCCAATGTCTGAAGCCGTGGCTCCTCCAGAGTTTGCTTTTGGGAGTAATAC 1386
Query 902 AAACGGGTTAGTGAAAGCATGGGAAGGAGAGAGGATACACGAGGAGAGTGGTTCAGATGA 961
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 AAACGGGCTAGTGAAAGCATGGGAAGGAGAGAGGATACACGAGGAGAGTGGTTCAGATGA 1446
Query 962 TCTTGAACTCACTCTTGGAAATTCAAGCACCAGGTAATTCCAAC-CCACATGTACATT 1018
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1447 TCTTGAACTCACTCTTGGAAACTCAAGCACCAGGTAATTCCAAAGCCACATGTACATT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5