BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927290

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46740.1 | Symbols: UBP21 | ubiquitin-specific protease 21 |...   152    2e-36


> AT5G46740.1 | Symbols: UBP21 | ubiquitin-specific protease 21 
| chr5:18965271-18968742 REVERSE LENGTH=2588
Length=2588

 Score =  152 bits (82),  Expect = 2e-36
 Identities = 142/170 (84%), Gaps = 8/170 (5%)
 Strand=Plus/Plus

Query  43   GGGTGCAGGGCTATATAAATTCAGGCAACACTTGTTTCATAGCTTCTGCGTTGCAGTGCT  102
            ||| || ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct  734  GGG-GCTGGGCTATAT-AATTCAGGCAACACTTGTTTCATAGCTTCTGTGTTACAGTGCT  791

Query  103  TCACTCATACTGTGCCTCTTCTTGAGAGCCTTCACTCATACAA--ATGTCAAAGCCCTTG  160
            |||||||||||||||||||| | || || ||||  |||| ||   |||  ||| ||||||
Sbjct  792  TCACTCATACTGTGCCTCTTATCGATAGTCTTCGTTCATTCATGTATGG-AAA-CCCTTG  849

Query  161  CAACCGTGGCAGCGAGACA-TTCTGTGTTATGCATGCTCTCCAAGATCAT  209
            |||| |||| |  |||| | |||||||| ||||| ||||| | |||||||
Sbjct  850  CAACTGTGGAAATGAGA-AGTTCTGTGTAATGCAAGCTCTTCGAGATCAT  898



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5