BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927295
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78815.1 | Symbols: LSH7 | Protein of unknown function (DUF6... 966 0.0
AT4G18610.1 | Symbols: LSH9 | Protein of unknown function (DUF6... 93.5 2e-18
> AT1G78815.1 | Symbols: LSH7 | Protein of unknown function (DUF640)
| chr1:29631743-29632745 REVERSE LENGTH=1003
Length=1003
Score = 966 bits (523), Expect = 0.0
Identities = 593/624 (95%), Gaps = 16/624 (3%)
Strand=Plus/Plus
Query 3 TAACCATCAACGATCTACCATGGCTAGTAC-TAGCAACAAAGGTAAAGGAATAGCAGAAG 61
|||||||||||| ||||||||||||||| | |||||||||||| ||||| ||||||||||
Sbjct 86 TAACCATCAACGTTCTACCATGGCTAGT-CATAGCAACAAAGGCAAAGGCATAGCAGAAG 144
Query 62 GATCG--T------C--T--CAACCGCAACCACAACCACACCAACCGCAATCACCTCCTA 109
||||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 145 GATCGTCTCAACCGCAATCGCAACCGCAACCACAACCACACCAACCGCAATCACCTCCTA 204
Query 110 ACCCGCCAGCGTTAAGCCGGTACGAGTCACAGAAAAGGCGAGACTGGAACACGTTTTGTC 169
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 205 ACCCGCCAGCGTTAAGCCGGTACGAGTCACAGAAACGACGAGACTGGAACACGTTTTGTC 264
Query 170 AATACCTGCGTAACCAACAGCCACCGGTTCACATCTCGCAGTGTGGCTCAAACCACATCC 229
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 265 AATACCTGCGTAACCAACAGCCACCGGTTCACATCTCGCAGTGTGGATCAAACCACATCC 324
Query 230 TAGATTTCCTCCAATATCTCGACCAATTCGGGAAGACAAAGGTTCATATCCATGGATGCG 289
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 325 TCGATTTCCTCCAATATCTCGACCAGTTTGGGAAGACAAAGGTTCATATCCATGGATGCG 384
Query 290 TTTTCTTCGGACAGGTTGAGCCAGCGGGACAGTGTAACTGTCCTTTGAAACAAGCGTGGG 349
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 385 TTTTCTTCGGACAGGTTGAGCCAGCGGGACAGTGTAACTGTCCTTTAAAACAAGCGTGGG 444
Query 350 GGAGTTTAGATGCTTTGATCGGACGGCTAAGAGCGGCTTTCGAGGAGAACGGAGGGTTGC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 445 GGAGTTTAGATGCTTTGATCGGACGGCTAAGAGCGGCTTTCGAGGAGAACGGAGGATTGC 504
Query 410 CGGAGAGAAACCCTTTTGCCGGCGGCGGAATTAGGGTTTTTCTGAGGGAAGTGAGAGATT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CGGAGAGAAACCCTTTTGCCGGCGGCGGAATTAGGGTTTTTCTGAGGGAAGTGAGAGATT 564
Query 470 CACAGGCGAAGGCAAGAGGAGTTCCGTACAAGAAAAGGAAGAAGAGGAAGAAGAGGAATC 529
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 565 CACAGGCGAAGGCAAGAGGAGTTCCGTACAAGAAAAGAAAAAAGAGGAAGAAGAGGAATC 624
Query 530 CAATGAAGAGTCATGATGGTGAAGATGGTACTACGGGAACTACTAGTAGCTCCAACTTG- 588
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 625 CTATGAAGAGTCATGATGGTGAAGATGGTACTACGGGAACTAGTAGTAGCTCCAACTTGG 684
Query 589 CTTTCTTAGCGGAAGCAAACAAAA 612
||| ||||||||||||||||||||
Sbjct 685 CTT-CTTAGCGGAAGCAAACAAAA 707
> AT4G18610.1 | Symbols: LSH9 | Protein of unknown function (DUF640)
| chr4:10250698-10251542 FORWARD LENGTH=845
Length=845
Score = 93.5 bits (50), Expect = 2e-18
Identities = 155/203 (76%), Gaps = 17/203 (8%)
Strand=Plus/Plus
Query 328 TGTCCTTTGAAACAAGCGTGGGGGAGTTTAGATGCTTTGATCGGACGGCTAAGAGCGGCT 387
|||||| | |||||||| ||||| || |||||||||||||||||||||||||||| |||
Sbjct 406 TGTCCTCTCAAACAAGCTTGGGGAAGCCTAGATGCTTTGATCGGACGGCTAAGAGCTGCT 465
Query 388 TTCGAGGAGA-ACGGAGG-GT-TG-CCGGAGAGAAACCCTTTTGCCGGCGG--CGGAATT 441
| |||||| | |||| || | | || || | ||||| ||||| ||| || | |
Sbjct 466 TACGAGGA-ACACGGTGGCGGGTCACCTGATACTAACCCGTTTGCAAACGGGTCG-A-TC 522
Query 442 AGGGTTTTTCT-GAGGGAAGTGAGAGATTCACAGGCGAAGGCAAGAGG-AGTTCCGTACA 499
||||| || ||||||||||||||| || || || ||||| | || | |||||||||
Sbjct 523 CGGGTTCA-CTTGAGGGAAGTGAGAGAATCTCAAGCCAAGGCTCGTGGGA-TTCCGTACA 580
Query 500 AGAA-AAGGAAGAAG-AGGAAGA 520
||| ||| || ||| |||||||
Sbjct 581 GGAAGAAG-AA-AAGGAGGAAGA 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5