BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927298
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78850.1 | Symbols: | D-mannose binding lectin protein with... 2165 0.0
AT1G78860.1 | Symbols: | D-mannose binding lectin protein with... 1901 0.0
> AT1G78850.1 | Symbols: | D-mannose binding lectin protein with
Apple-like carbohydrate-binding domain | chr1:29641926-29643431
REVERSE LENGTH=1506
Length=1506
Score = 2165 bits (1172), Expect = 0.0
Identities = 1304/1368 (95%), Gaps = 8/1368 (1%)
Strand=Plus/Plus
Query 1 CATCAA-ACACAC-ATAACAAAATGAAATTCTCACTCACATTAGCTCTCTGCTTAACCCT 58
||| || |||||| | |||||||||||||| ||| ||||||||||||| ||||| || ||
Sbjct 13 CATTAACACACACAAAAACAAAATGAAATTTTCAATCACATTAGCTCTATGCTTCACTCT 72
Query 59 CTCCATCTTCTT-AACTGGAGCACAAGCCAAAGTTCCCGTCGACGACCAATTCCGAGTGG 117
|||||||||||| | | ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 73 CTCCATCTTCTTGATC-GGATCACAAGCCAAAGTTCCAGTCGACGACCAATTCCGAGTGG 131
Query 118 TCAACGAAGGAGGCTACACCGATTACAGTCCAATCGAGTACAACCCCGACGTACGTGGCT 177
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 132 TCAACGAAGGTGGCTACACCGATTACAGTCCCATCGAATACAACCCCGACGTACGTGGCT 191
Query 178 TCGTCCCCTTCAGCGACAACTTCCGTCTCTGTTTCTACAACACAACCCCAAACGCATACA 237
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 TCGTACCCTTCAGTGACAACTTCCGTCTCTGTTTCTACAACACAACCCCAAACGCATACA 251
Query 238 CTCTCGCTCTTAGAATCGGAAATAGAGCCCAAGAATCCACTCTCAGATGGGTCTGGGAAG 297
|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 252 CTCTCGCTCTCAGAATCGGAAACAGAGTCCAAGAATCCACTCTCAGATGGGTCTGGGAAG 311
Query 298 CAAACAGAGGCTCACCGGTCAAAGAAAATGCGACGTTGACTTTCGGTGAAGACGGGAACC 357
|||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct 312 CAAACAGAGGCTCACCGGTCAAAGAAAACGCGACGTTGACTTTTGGCGAAGACGGAAACC 371
Query 358 TCGTACTCGCTGAAGCCGATGGCCG-TGTGGTCTGGCAAACGAACACGGCTAACAAAGGC 416
|||||||||||||||||||||| || | |||| |||||||||||||| ||||||||||||
Sbjct 372 TCGTACTCGCTGAAGCCGATGGACGCT-TGGTATGGCAAACGAACACAGCTAACAAAGGC 430
Query 417 GCCGTGGGGATCAAAATCTTGGAGAATGGCAATATGGTAATATACGATTCCAGTGGGAAA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 431 GCCGTGGGGATCAAAATCTTGGAGAATGGCAATATGGTAATATACGATTCCAGTGGAAAA 490
Query 477 TTTGTATGGCAGAGCTTTGATTCTCCCACCGACACACTTCTCGTTGGACAGTCTTTGAAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TTTGTATGGCAGAGCTTTGATTCTCCCACCGACACACTTCTCGTTGGACAGTCTTTGAAA 550
Query 537 CTCAACGGTCGGACCAAGCTCGTAAGCAGACTGTCTCCATCGGTCAACACAAACGGACCG 596
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 551 CTCAACGGTCGGACCAAACTCGTAAGCAGACTGTCTCCATCTGTCAACACAAACGGACCG 610
Query 597 TATAGTCTCGTGATGGAAGCCAAGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCG 656
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TACAGTCTCGTGATGGAAGCCAAGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCG 670
Query 657 AAACCAATCGCTTATTACGAATACGAATTCTTCACCAAAATAACTCAGTTACAGTCTATG 716
|||||||||||||||| |||||||||||||||||||| ||||| || || ||||| |||
Sbjct 671 AAACCAATCGCTTATTTTGAATACGAATTCTTCACCAAGATAACACAATTCCAGTCAATG 730
Query 717 ACGTTCCAAGCCGTGGAAGATTCGGACACAACGTGGGGTCTACACATGGAAGGTGTCGAT 776
||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 731 ACGTTCCAAGCTGTGGAAGATTCCGACACAACGTGGGGTCTAGTCATGGAAGGTGTCGAT 790
Query 777 TCTGGTTCTAAATTCAACGTTTCAACGTTCCTCTCACGGCCGAAACACAACGCGACGTTG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TCTGGTTCTAAATTCAACGTTTCAACGTTCCTCTCACGGCCGAAACACAACGCGACGTTG 850
Query 837 AGTTTTATTCGGTTAGAGTCAGACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCA 896
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AGTTTTATTCGGTTAGAATCAGACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCG 910
Query 897 ACTTCCACGGCTTGGGACGTGACATACACGGCGTTTACTAACGACGACACTGACGGTAAC 956
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 911 ACTTCCACGGCTTGGGACGTGACATACACGGCGTTTACCAACGCCGACACTGACGGTAAC 970
Query 957 GACGAGTGTAGGATCCCTGAGCATTGTTTGGGTTTTGGTTTGTGTAAGAAAGGTCAGTGT 1016
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 971 GACGAGTGTAGGATCCCTGAGCATTGTTTGGGGTTTGGTTTGTGTAAGAAAGGCCAGTGT 1030
Query 1017 AACGCTTGTCCTAGCGACAAAGGGCTTCTTGGTTGGGACGAGACATGTAAAACTCCGAGT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1031 AACGCTTGTCCTAGCGACAAAGGGCTTCTTGGTTGGGACGAGACATGTAAATCTCCAAGT 1090
Query 1077 CTCGCAAGTTGCGATCCCAAGACTTTTCACTACTTCAAGATCGAAGGAGCTGATAGTTTC 1136
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1091 CTCGCAAGTTGCGATCCCAAGACATTTCACTACTTCAAGATCGAAGGAGCTGATAGTTTC 1150
Query 1137 ATGACAAAATATAACGGTGGATCATCGACGACTGAGAGTGCGTGTGGGGACAAGTGTACG 1196
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1151 ATGACAAAATATAACGGTGGATCATCGACGACGGAGAGTGCGTGTGGGGACAAGTGTACG 1210
Query 1197 AGAGATTGCAAATGTTTAGGGTTTTTCTACAATAGGAAGAGTTCGAAGTGTTGGTTGGGT 1256
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1211 AGAGATTGCAAATGTTTAGGGTTTTTCTACAATAGAAAGAGTTCGAGGTGTTGGTTGGGC 1270
Query 1257 TACGAGCTCAAGACATTGACTAGAACCGGAGATTCTTCGCTGGTTGCTTATGTCAAAGCT 1316
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1271 TACGAGCTCAAGACATTGACTAGAACCGGAGATTCTTCCCTGGTTGCTTATGTCAAAGCT 1330
Query 1317 CCTAATGCTAACAAAAAGTTCA-CTCTTTGAGGTGTGAAAGTCATATA 1363
|||||||| |||||||||| || ||||||||||| |||||||||||||
Sbjct 1331 CCTAATGCAAACAAAAAGT-CAACTCTTTGAGGTCTGAAAGTCATATA 1377
> AT1G78860.1 | Symbols: | D-mannose binding lectin protein with
Apple-like carbohydrate-binding domain | chr1:29646168-29647499
REVERSE LENGTH=1332
Length=1332
Score = 1901 bits (1029), Expect = 0.0
Identities = 1228/1326 (93%), Gaps = 6/1326 (0%)
Strand=Plus/Plus
Query 21 ATGAAATTCTC-ACTCACATTAGCTCTCTGCTTAACCCTCTCCATCTTCTTAACT-GGAG 78
||| ||||||| || |||||||||||| | ||| || |||||||| ||||| | ||||
Sbjct 1 ATGGAATTCTCAAC-CACATTAGCTCTGTTCTTCACTCTCTCCATATTCTT-GGTCGGAG 58
Query 79 CACAAGCCAAAGTTCCCGTCGACGACCAATTCCGAGTGGTCAACGAAGGAGGCTACACCG 138
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 CACAAGCCAAAGTTCCCGTCGACGACCAATTTCGAGTGGTCAACGAAGGAGGCTACACCG 118
Query 139 ATTACAGTCCAATCGAGTACAACCCCGACGTACGTGGCTTCGTCCCCTTCAGCGACAACT 198
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATTACAGTCCCATCGAATACAACCCCGACGTACGTGGCTTCGTCCCCTTCAGCGACAACT 178
Query 199 TCCGTCTCTGTTTCTACAACACAACCCCAAACGCATACACTCTCGCTCTTAGAATCGGAA 258
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 179 TCCGTCTCTGTTTCTACAACACAACCCAAAACGCATACACTCTCGCTCTTAGAATCGGAA 238
Query 259 ATAGAGCCCAAGAATCCACTCTCAGATGGGTCTGGGAAGCAAACAGAGGCTCACCGGTCA 318
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 239 ACAGAGCCCAAGAATCCACTCTAAGATGGGTCTGGGAAGCAAACAGAGGCTCACCAGTCA 298
Query 319 AAGAAAATGCGACGTTGACTTTCGGTGAAGACGGGAACCTCGTACTCGCTGAAGCCGATG 378
||||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||
Sbjct 299 AAGAAAACGCCACGTTGACTTTCGGCGAAGATGGAAACCTTGTACTTGCTGAAGCCGATG 358
Query 379 GCCGTGTGGTCTGGCAAACGAACACGGCTAACAAAGGCGCCGTGGGGATCAAAATCTTGG 438
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 359 GCCGCGTGGTCTGGCAAACGAACACGGCTAACAAAGGCGTCGTGGGGATCAAAATTTTGG 418
Query 439 AGAATGGCAATATGGTAATATACGATTCCAGTGGGAAATTTGTATGGCAGAGCTTTGATT 498
|||||||||||||||||||||| ||||| | ||| ||||| |||||||| |||||||| |
Sbjct 419 AGAATGGCAATATGGTAATATATGATTCAAATGGAAAATTCGTATGGCAAAGCTTTGACT 478
Query 499 CTCCCACCGACACACTTCTCGTTGGACAGTCTTTGAAACTCAACGGTCGGACCAAGCTCG 558
|||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 479 CTCCGACCGACACGCTTCTCGTTGGACAGTCTTTGAAACTCAACGGTCAAAACAAGCTCG 538
Query 559 TAAGCAGACTGTCTCCATCGGTCAACACAAACGGACCGTATAGTCTCGTGATGGAAGCCA 618
|||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 539 TAAGCAGACTTTCTCCATCGGTCAACGCAAACGGACCGTACAGTCTCGTGATGGAAGCCA 598
Query 619 AGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCGAAACCAATCGCTTATTACGAAT 678
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 599 AGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCAAAACCAATCGGTTACTACGAAT 658
Query 679 ACGAATTCTTCACCAAAATAACTCAGTTACAGTCTATGACGTTCCAAGCCGTGGAAGATT 738
|||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 659 ACGAATTCTTCACCAAGATAGCTCAGTTACAGTCTATGACGTTCCAAGCTGTGGAGGATG 718
Query 739 CGGACACAACGTGGGGTCTACACATGGAAGGTGTCGATTCTGGTTCTAAATTCAACGTTT 798
| ||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 719 CCGACACCACGTGGGGTCTACACATGGAAGGTGTCGACTCTGGTTCTCAATTCAACGTCT 778
Query 799 CAACGTTCCTCTCACGGCCGAAACACAACGCGACGTTGAGTTTTATTCGGTTAGAGTCAG 858
| ||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 779 CGACGTTCCTCTCGCGGCCTAAACACAATGCGACGTTGAGTTTTCTTCGGTTAGAGTCAG 838
Query 859 ACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCAACTTCCACGGCTTGGGACGTGA 918
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 839 ACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCGACTTCCACGGCTTGGGACGTAA 898
Query 919 CATACACGGCGTTTACTAACGACGACACTGACGGTAACGACGAGTGTAGGATCCCTGAGC 978
| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 899 CGTACACGGCGTTTACTAACGACAACACTGACGGTAACGATGAGTGTAGGATCCCTGAGC 958
Query 979 ATTGTTTGGGTTTTGGTTTGTGTAAGAAAGGTCAGTGTAACGCTTGTCCTAGCGACAAAG 1038
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 959 ATTGTTTGGGGTTTGGTTTGTGTAAGAAAGGTCAGTGTAACGCTTGTCCTAGCGACATAG 1018
Query 1039 GGCTTCTTGGTTGGGACGAGACATGTAAAACTCCGAGTCTCGCAAGTTGCGATCCCAAGA 1098
|||||||||||||||| ||||| || || | |||||||||||| ||||||||||||||||
Sbjct 1019 GGCTTCTTGGTTGGGATGAGACTTGCAAGATTCCGAGTCTCGCTAGTTGCGATCCCAAGA 1078
Query 1099 CTTTTCACTACTTCAAGATCGAAGGAGCTGATAGTTTCATGACAAAATATAACGGTGGAT 1158
| |||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1079 CATTTCACTATTTCAAGATCGAAGGAGCTGATAGTTTTATGACGAAGTATAACGGTGGAT 1138
Query 1159 CATCGACGACTGAGAGTGCGTGTGGGGACAAGTGTACGAGAGATTGCAAATGTTTAGGGT 1218
|| |||| || |||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1139 CAACGACAACGGAGAGTGCGTGTGGGGACAAATGTACGAGAGATTGTAAGTGTTTAGGGT 1198
Query 1219 TTTTCTACAATAGGAAGAGTTCGAAGTGTTGGTTGGGTTACGAGCTCAAGACATTGACTA 1278
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1199 TTTTCTACAATAGGAAGAGTTCGAGGTGTTGGTTGGGTTATGAGCTCAAGACATTGACTA 1258
Query 1279 GAACCGGAGATTCTTCGCTGGTTGCTTATGTCAAAGCTCCTAATGCTAACAAAAAGTTCA 1338
|||||||||| |||| || |||||||||||||| ||||| ||||||| ||| |||| ||
Sbjct 1259 AAACCGGAGATACTTCCCTAGTTGCTTATGTCAAGGCTCCGAATGCTAGCAAGAAGT-CA 1317
Query 1339 -CTCTT 1343
|||||
Sbjct 1318 GCTCTT 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5