BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927299
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78870.1 | Symbols: UBC35, UBC13A | ubiquitin-conjugating en... 863 0.0
AT1G16890.3 | Symbols: UBC36 | ubiquitin-conjugating enzyme 36 ... 531 3e-150
> AT1G78870.1 | Symbols: UBC35, UBC13A | ubiquitin-conjugating
enzyme 35 | chr1:29650463-29652517 FORWARD LENGTH=905
Length=905
Score = 863 bits (467), Expect = 0.0
Identities = 505/523 (97%), Gaps = 3/523 (1%)
Strand=Plus/Plus
Query 1 TCAAAAACCCTAACGCTCTGAGCTCGATCGACAAGTGATAATGGCCAACAGTAATTTGCC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 TCAAAAACCCTAACTCTCTGAGCTCGATCGACAAGTGATAATGGCCAACAGTAATTTGCC 146
Query 61 GCGAAGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACCGGCTCCCGGTATAAGTGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 GCGAAGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACCGGCTCCCGGTATAAGTGC 206
Query 121 CTCTCCATCTGAGGATAATATGCGGTATTTCAATGTTATGATTCTTGGTCCTTCACAATC 180
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 207 CTCTCCATCTGAGGATAATATGCGGTATTTCAACGTTATGATTCTTGGTCCTACACAATC 266
Query 181 ACCTTATGAAGG-AG-G-AGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGAATACCCTAT 237
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 ACCTTATGAAGGTAGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGAATACCCTAT 326
Query 238 GGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACATTGACAAGCTTGG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACATTGACAAGCTTGG 386
Query 298 AAGAATCTGTCTTGATATTTTGAAGGACAAATGGAGCCCTGCACTACAAATACGAACAGT 357
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 387 AAGAATCTGTCTTGATATTCTCAAGGACAAATGGAGCCCTGCACTACAAATACGAACAGT 446
Query 358 GCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATCCGCTGTCTGAGAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 447 GCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATCCGCTTTCTGAGAA 506
Query 418 CATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGAGACAGCCAAAGAATGGAC 477
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 507 CATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGATACAGCTAAGGAATGGAC 566
Query 478 CCGCCTTTACGCAAGTGGCGCATAATGGATTGGAGGGTGAAAA 520
||| ||||| ||||| ||||||| || |||||||||||||||
Sbjct 567 CCGTCTTTATGCAAGCGGCGCATGATAAATTGGAGGGTGAAAA 609
> AT1G16890.3 | Symbols: UBC36 | ubiquitin-conjugating enzyme 36
| chr1:5776177-5778484 REVERSE LENGTH=1019
Length=1019
Score = 531 bits (287), Expect = 3e-150
Identities = 361/398 (91%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 105 CTCCCGGTATAAGTGCCTCTCCATCTGAGGATAATATGCGGTATTTCAATGTTATGATTC 164
|||| || |||||||| |||||||| ||||| |||||| | |||||||||||||||||||
Sbjct 249 CTCCTGGGATAAGTGCGTCTCCATCAGAGGAAAATATGAGATATTTCAATGTTATGATTC 308
Query 165 TTGGTCCTTCACAATCACCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTG 224
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTGGTCCTACTCAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTG 368
Query 225 AAGAATACCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACA 284
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 369 AAGAATATCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATTTACCATCCTAACA 428
Query 285 TTGACAAGCTTGGAAGAATCTGTCTTGATATTTTGAAGGACAAATGGAGCCCTGCACTAC 344
| |||||||||||||||||||| ||||| || |||| ||||| ||||| ||||||||||
Sbjct 429 TCGACAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTAC 488
Query 345 AAATACGAACAGTGCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATC 404
|||||||||| |||||||| ||||| ||||||||| | ||||||||||||||||||||||
Sbjct 489 AAATACGAACTGTGCTCTTGAGTATCCAAGCTCTTTTAAGTGCACCAAACCCAGATGATC 548
Query 405 CGCTGTCTGAGAACATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGAGACAG 464
| |||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 549 CTCTGTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAGGCAGAAGCTGTGGAAACAG 608
Query 465 CCAAAGAATGGACCCGCCTTTACGCAAGTGGCGCATAA 502
| || |||||||| || |||||||||||||| || |||
Sbjct 609 CTAAGGAATGGACTCGTCTTTACGCAAGTGGTGCTTAA 646
Score = 91.6 bits (49), Expect = 7e-18
Identities = 93/112 (83%), Gaps = 11/112 (10%)
Strand=Plus/Plus
Query 1 TCAAAAACCCTAAC-GCTC--TGA-GCTCG-AT-CGACA-AGT--GATAATGGCCAACAG 51
|||||||||||||| ||| ||| | ||| || ||| | || |||||||||||| ||
Sbjct 109 TCAAAAACCCTAACTTCTCTGTGACGATCGAATCCGATAGCGTGCGATAATGGCCAATAG 168
Query 52 TAAT-TTGCCGCGAAGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACC 102
|||| || || ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 169 TAATCTT-CCCCGACGAATCATCAAGGAAACTCAACGTCTGCTTAGTGAACC 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5